Pairwise Alignments

Query, 456 a.a., NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 801 a.a., electron transport complex subunit RsxC from Vibrio cholerae E7946 ATCC 55056

 Score = 55.8 bits (133), Expect = 5e-12
 Identities = 94/441 (21%), Positives = 165/441 (37%), Gaps = 67/441 (15%)

Query: 24  RQIIEPGNRPSQVALLGEEYVGLKPTMLVEVGDKVKKGQPLFEDKKTKGVFFTAPASGEI 83
           RQ I   + P+++ L  ++++G    +LV+VGD+V KGQPL +   T  +   AP SG I
Sbjct: 58  RQPIINASIPNELVLPLKQHIGKAGDLLVKVGDRVLKGQPLTQYTSTFMLPIHAPTSGVI 117

Query: 84  VAINRGERRVLQSVVIRCNGLDADEQ---IRFDIHADLQSLSAQVVQAQLVNSGLWTALR 140
            AI          +   C  L  D+Q          D Q L+ + +   +  +G+ + + 
Sbjct: 118 SAIEPRTVAHPSGLSELCIVLTPDQQEEWFELQPQPDFQQLTPETLLELIRQAGI-SGMG 176

Query: 141 TRPFSRVPALD---SKPAGIFVTAMDTNPLAADPRLIIAEQSDAFKAGLAVLSHLTDGKV 197
              F     L    S+   + + A +  P      +++ + +     G+ ++ H+   K+
Sbjct: 177 GAGFPTAKKLQSGLSRTEILIINAAECEPYITADDVLMRQYAHEIIQGIEIVEHILKPKL 236

Query: 198 YLC---QDKGEAL-----VGADLPKVEVRRFTGVHPAGLAGTHIHFT---------LPVS 240
            +     +K EA+        D P V +R     +P+G     I            +P  
Sbjct: 237 TIIGIEDNKPEAVAALQQAAQDKPMV-IRVIPTKYPSGGEKQLIKILTNLEVPKGGIPAD 295

Query: 241 IERQVWHIGYQDVIAYGKLFQTGELYTDRVVALGGPSVLNPRLLRTQLGAELSALVAD-- 298
           I   V ++G    IA  +    GE    RVV L G     PR +   LG  + AL+ +  
Sbjct: 296 IGLMVQNVGSLQAIA--RAIVHGEPLIRRVVTLTGDCFRKPRNVWALLGTPVQALLNEFG 353

Query: 299 -EVKSGNNRVVSGSVLSGHTAQGVHDFLGRFHNQISVLAEDAQHQVLPWVRGGSDKFSIT 357
            +      R++ G  + G T                       H  +P  +  +   + T
Sbjct: 354 YKADKKLPRLIMGGPMMGFT---------------------LPHAQVPITKTANCILAPT 392

Query: 358 RAVTSRLFGLTKSFEFTTHQGGSQRAMMAFGQLDRVMPLDILPTLLVRDLVVRDTDEAQA 417
           R             E T+    ++ A +  GQ     P+ +LP  L       + D+ + 
Sbjct: 393 RN------------ELTS--SDNEMACIRCGQCAEACPVSLLPQQLQWHAKAEEFDKCEE 438

Query: 418 LGALELDEEDLALCTFVCPGK 438
           L   +  E     C +VCP +
Sbjct: 439 LDLKDCIE--CGACAYVCPSE 457