Pairwise Alignments

Query, 456 a.a., NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 456 a.a., Na(+)-translocating NADH-quinone reductase subunit A (RefSeq) from Shewanella loihica PV-4

 Score =  697 bits (1800), Expect = 0.0
 Identities = 350/456 (76%), Positives = 390/456 (85%), Gaps = 3/456 (0%)

Query: 1   MADFSNQVITIKKGLDLPISGEPRQIIEPGNRPSQVALLGEEYVGLKPTMLVEVGDKVKK 60
           MA F +++ TIKKGLD+PI+GEPRQ I+   RP++VALLGEEYVGLKPT+LVEVGD+VKK
Sbjct: 4   MAGFPDKIKTIKKGLDVPIAGEPRQEIDCCARPAKVALLGEEYVGLKPTLLVEVGDRVKK 63

Query: 61  GQPLFEDKKTKGVFFTAPASGEIVAINRGERRVLQSVVIRCNGLDADEQIRFDIHADLQS 120
           GQ LFEDKK  G+ FTAPASG +V INRGERRVLQSVVI+  G   DEQ+ F  ++DL  
Sbjct: 64  GQTLFEDKKAPGIGFTAPASGVVVEINRGERRVLQSVVIQVEG---DEQVTFKAYSDLSR 120

Query: 121 LSAQVVQAQLVNSGLWTALRTRPFSRVPALDSKPAGIFVTAMDTNPLAADPRLIIAEQSD 180
           LS + VQ  L  SGLWTALRTRPFSRVP LDS+PA IFV AMDTNPLAADPR+IIAEQ +
Sbjct: 121 LSREAVQQNLAESGLWTALRTRPFSRVPLLDSEPAAIFVNAMDTNPLAADPRVIIAEQRE 180

Query: 181 AFKAGLAVLSHLTDGKVYLCQDKGEALVGADLPKVEVRRFTGVHPAGLAGTHIHFTLPVS 240
           AF AGL VL++LT GK++LC D GEAL GADL +VE  RF GVHPAGL GTHIHF  P S
Sbjct: 181 AFAAGLEVLTYLTSGKIHLCHDAGEALPGADLARVESHRFAGVHPAGLVGTHIHFIAPAS 240

Query: 241 IERQVWHIGYQDVIAYGKLFQTGELYTDRVVALGGPSVLNPRLLRTQLGAELSALVADEV 300
           +ER VWH+GYQDVIAYGKLF TGELYTDRVVALGGP+ LNPRLLRTQLGA+LS LV  E+
Sbjct: 241 LERPVWHLGYQDVIAYGKLFLTGELYTDRVVALGGPTALNPRLLRTQLGAQLSTLVEGEI 300

Query: 301 KSGNNRVVSGSVLSGHTAQGVHDFLGRFHNQISVLAEDAQHQVLPWVRGGSDKFSITRAV 360
           K G+NRVVSGSVL+GHTA GVHD+LGRFH QISVLAEDA+HQ+LPWVRGG+DKFSITRAV
Sbjct: 301 KPGSNRVVSGSVLAGHTAFGVHDYLGRFHQQISVLAEDAKHQLLPWVRGGADKFSITRAV 360

Query: 361 TSRLFGLTKSFEFTTHQGGSQRAMMAFGQLDRVMPLDILPTLLVRDLVVRDTDEAQALGA 420
           TSR     + F+ TTH GGS RAMMAFGQLDRVMPLDILPTLLVRDLVVRDTDEAQALGA
Sbjct: 361 TSRFKATKRLFDLTTHAGGSHRAMMAFGQLDRVMPLDILPTLLVRDLVVRDTDEAQALGA 420

Query: 421 LELDEEDLALCTFVCPGKYDFGKELRACLDVIEREG 456
           LELDEEDLALCTFVCPGKYDFG+ELR CLD+IEREG
Sbjct: 421 LELDEEDLALCTFVCPGKYDFGRELRICLDIIEREG 456