Pairwise Alignments

Query, 458 a.a., ATP-dependent RNA helicase DbpA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

 Score =  601 bits (1549), Expect = e-176
 Identities = 294/457 (64%), Positives = 370/457 (80%), Gaps = 1/457 (0%)

Query: 2   AFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLN 61
           +F+ L LK ELL NL +MG+  MTPIQAQSLPAIL G+DVIGQGKTGSGKTAAFGLG+L+
Sbjct: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64

Query: 62  KLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGA 121
            L+VKRFR+Q LVLCPTRELADQVA +IRTL R IHN+KVLTLCGG+PMGPQIGSLEHGA
Sbjct: 65  NLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGA 124

Query: 122 HIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLF 181
           HI+VGTPGRI+DHL ++R+DLS LN LVLDEADRMLEMGFQ  L+AII  +P ERQTLLF
Sbjct: 125 HILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLF 184

Query: 182 SATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEHKPE 241
           SAT+P  I+ IA+ +  N +M+K   TH+ ++I Q+FY+++   +R +AL+ LLL H+P 
Sbjct: 185 SATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPT 244

Query: 242 SAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAA 301
           S+VVFCNTKRE Q VAD L   GFSV+ LHGD+EQR+RD+ L+QFANKS  +LVATDVAA
Sbjct: 245 SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAA 304

Query: 302 RGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYLDR 361
           RGLD+D LDAVFNY ++ D EVH+HRIGRTGRAGSKG A++F++D + Y++A ++EY+D 
Sbjct: 305 RGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDI 364

Query: 362 EITSESLPSLSLLGSAPNAPTMITLQIDGGKKEKLRPGDILGALTGDNGIEGTQVGKILV 421
            I   +LP     G+ P A  M+T+QIDGGKK+K+RPGDILGALT D  +    +GKI +
Sbjct: 365 AIEPSTLPQ-PAAGARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKINL 423

Query: 422 TDYRAYVAVNRKVAKKALSKITSGRIKGKSYRAWLMK 458
              RAYVAV++K+A KAL+KI +G++KG+ +RA L+K
Sbjct: 424 FPMRAYVAVHKKIATKALNKIANGKMKGRQFRARLLK 460