Pairwise Alignments

Query, 637 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 554 a.a., ABC transporter from Burkholderia phytofirmans PsJN

 Score =  553 bits (1425), Expect = e-162
 Identities = 283/545 (51%), Positives = 367/545 (67%), Gaps = 21/545 (3%)

Query: 1   MISINQAQLIRGSKTLLDEASLTIYPGHKVGLVGANGTGKSSLLALIMGHLSLDKGEFSM 60
           MIS+    L RG   +LD AS+T  PG K+GLVG NG GKSS   L+ G L  D GEFS+
Sbjct: 1   MISVRNVTLRRGVNVVLDSASVTFTPGEKIGLVGRNGAGKSSFFGLLNGTLHEDSGEFSI 60

Query: 61  PSGWQIASVAQETPALDMSALEYVLDGDKEYRQLEADLHIAQEHNDGHAIATLHGKIDAI 120
           P+ W++  VAQE P  + SA ++V+DGD      +A++  A+  +DG  +A  +  +   
Sbjct: 61  PAAWKMGQVAQEMPETEQSATDFVIDGDTVLLAAQAEVAAAEASDDGMRMAHAYMALHDA 120

Query: 121 GGYAIRARAGALLAGLGFSEAEQNNPVKSFSGGWRMRLNLAQALLCRSDLLLLDEPTNHL 180
           G +   ARA AL+ GLGFS A+ + PV SFSGGWRMRL LA+AL+C SDLLLLDEPTNHL
Sbjct: 121 GAHDAPARAQALILGLGFSTAQLSQPVNSFSGGWRMRLQLARALMCPSDLLLLDEPTNHL 180

Query: 181 DLDTMYWLEGWIKSYQGTLILISHDRDFIDEIVDEIVHVENQKLNFYKGNYSAFERIRAE 240
           DLD + WLE W+K YQGTL++ISHDR+F+D +    VHV+N KL  Y GNYS FE +RAE
Sbjct: 181 DLDALVWLEAWLKRYQGTLVVISHDREFLDAVTQVTVHVDNAKLVRYGGNYSKFEDMRAE 240

Query: 241 RMAQQQVAFERQQKERAHMQSFVDRFRYKASKAKQAQSRLKALERMTELLPSQADSPFYM 300
           ++  QQ A  RQ  + AH+Q F+DRF+ KASKAKQAQSR+KALERM ++ P  AD+ F  
Sbjct: 241 QLLLQQAAMARQADKIAHLQKFIDRFKAKASKAKQAQSRVKALERMEKIAPVLADAEFTF 300

Query: 301 EFRPPEALPNPLIKMEQVAVGYG----------DKQILSKVHLNLVPGARIGLLGRNGAG 350
           EF+ P  +PNPL+ M   + GY              I+  ++ +++ G RIG+LG NG G
Sbjct: 301 EFKEPLNVPNPLLSMLDASFGYAAPTDAPPGTPPTVIVRGINRSVLAGQRIGILGANGQG 360

Query: 351 KSTLIKLLSGQLSPMTGLYEPNPGLNIGYFAQHQIEFLRLDDTPLQHLVRLA-------- 402
           KSTL+K ++ +L+P+ G      GLNIGYFAQ +++ LR  DTP++H++RLA        
Sbjct: 361 KSTLVKTVAHELAPIAGEISEGKGLNIGYFAQQELDVLRPLDTPMEHMIRLAKDTSAHMR 420

Query: 403 ---PNAREQELRNFLGGFGFNGDMALSPVRPFSGGEKARLVLALLVWQRPNLLLLDEPTN 459
               +  EQ LR FLG F F+GDM    V   SGGEKARLVL ++VWQRPNLLLLDEPTN
Sbjct: 421 APGQSGTEQSLRTFLGTFNFSGDMVHQAVSTMSGGEKARLVLCMIVWQRPNLLLLDEPTN 480

Query: 460 HLDLEMRHALTMALQTFEGAMVIVSHDRHLLRLTCSDYYLVDQGEVQAFDGDLDDYHQWL 519
           HLDL  R AL MAL  FEG +++VSHDR LLR  C +++LV +G V+ FDGDLDDY Q+L
Sbjct: 481 HLDLATREALGMALNEFEGTVMLVSHDRSLLRAVCDEFWLVTKGGVEPFDGDLDDYQQFL 540

Query: 520 LDAAK 524
            D A+
Sbjct: 541 RDEAR 545



 Score =  103 bits (257), Expect = 2e-26
 Identities = 93/314 (29%), Positives = 138/314 (43%), Gaps = 53/314 (16%)

Query: 312 LIKMEQVAVGYGDKQILSKVHLNLVPGARIGLLGRNGAGKSTLIKLLSGQLSPMTGLYEP 371
           +I +  V +  G   +L    +   PG +IGL+GRNGAGKS+   LL+G L   +G +  
Sbjct: 1   MISVRNVTLRRGVNVVLDSASVTFTPGEKIGLVGRNGAGKSSFFGLLNGTLHEDSGEFSI 60

Query: 372 NPGLNIGYFAQHQIE-------FLRLDDTPLQHL-------------VRLA--------- 402
                +G  AQ   E       F+   DT L                +R+A         
Sbjct: 61  PAAWKMGQVAQEMPETEQSATDFVIDGDTVLLAAQAEVAAAEASDDGMRMAHAYMALHDA 120

Query: 403 ----PNAREQELRNFLGGFGFNGDMALSPVRPFSGGEKARLVLALLVWQRPNLLLLDEPT 458
                 AR Q L   + G GF+      PV  FSGG + RL LA  +    +LLLLDEPT
Sbjct: 121 GAHDAPARAQAL---ILGLGFSTAQLSQPVNSFSGGWRMRLQLARALMCPSDLLLLDEPT 177

Query: 459 NHLDLEMRHALTMALQTFEGAMVIVSHDRHLLRLTCSDYYLVDQGEVQAFDGD---LDDY 515
           NHLDL+    L   L+ ++G +V++SHDR  L         VD  ++  + G+    +D 
Sbjct: 178 NHLDLDALVWLEAWLKRYQGTLVVISHDREFLDAVTQVTVHVDNAKLVRYGGNYSKFEDM 237

Query: 516 HQWLLDAAKAASANQAANSDDTKPAVDKKQQKRLEAELRQKVSPLKRKQAKLEIDQQKLS 575
               L   +AA A QA      +  +D+          + K S  K+ Q+++     K  
Sbjct: 238 RAEQLLLQQAAMARQADKIAHLQKFIDR---------FKAKASKAKQAQSRV-----KAL 283

Query: 576 ERLAELEHLLADGE 589
           ER+ ++  +LAD E
Sbjct: 284 ERMEKIAPVLADAE 297