Pairwise Alignments

Query, 533 a.a., oxidoreductase, GMC family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1150 a.a., choline dehydrogenase from Pseudomonas fluorescens FW300-N2C3

 Score = 59.7 bits (143), Expect = 6e-13
 Identities = 67/287 (23%), Positives = 117/287 (40%), Gaps = 50/287 (17%)

Query: 32  DVVIVGTGAGGGVAAEILTQAGLSVIMIEAGPLKSSSDFNMEERVAYPNLYQQAAA---M 88
           DV+++G+G GGG+AA  L++AG  V ++E G      +        YPN    A     +
Sbjct: 16  DVIVIGSGYGGGIAASRLSRAGRKVCLLERGREIQPGE--------YPNTLLAATEELQV 67

Query: 89  KTADKAIG---------------IFQGRAVGGSTTIN----------------WTTSIRT 117
              D  IG               +  G  +GG++ IN                W  ++R 
Sbjct: 68  HDPDGHIGSRTGLFDLHVNAQQNVVVGCGLGGTSLINANVALEPEPGVFDDPRWPLAVRE 127

Query: 118 PKEALAFWAQHKSVAGLDPEALAPWFDQMEQRLNIHEWNYEPNRNNGALKQGCINLGWDY 177
            ++ L      ++   L P         +  +L+ H+ + +  +      +  IN+ +D 
Sbjct: 128 HRDTLLKDGYARAREMLKPNPYPASAPNLP-KLDAHKKSADYLKQGAHFYKPPINVTFDK 186

Query: 178 TVIKRNVAG-----CWNTGYCGMGCPVNAKQSMLVTTIPSALEKGAQLISRAKVVKIEHH 232
                N  G     C   G C  GC   AK + L+  +P A   GA++  +A+V  +E  
Sbjct: 187 LPNNLNHVGVEQLPCNGCGDCVSGCNNKAKNTTLMNYLPDAWNHGAEIFCQAEVRHLE-R 245

Query: 233 NGQVFALKAQALDVNLRPTAVELLF-KAKHYILSAGAIHTPTLMMRS 278
           +G  + +  Q LD      +   LF +A   ++SAG + +  +M+RS
Sbjct: 246 DGDGWIVHFQYLDSGRELFSAPTLFVRADIVVVSAGTLGSTEIMLRS 292



 Score = 53.9 bits (128), Expect = 3e-11
 Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 7/76 (9%)

Query: 455 LKTVVASAHVMGGCPLGEDEKLSMVNSYGQ-------SHYLNNLSVMDGSIFPTSLGANP 507
           LK  + S H +GGC +GED    +VN  GQ       +     L V DG++ PTSL  NP
Sbjct: 484 LKHSIVSVHPLGGCVMGEDATQGVVNHKGQVFSGASGTDVYPGLYVTDGAVIPTSLAVNP 543

Query: 508 QLSIYGITARNATALA 523
            L+I  ++ RN   LA
Sbjct: 544 LLTISAVSERNMGLLA 559