Pairwise Alignments

Query, 438 a.a., polyA polymerase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 457 a.a., polynucleotide adenylyltransferase PcnB from Vibrio cholerae E7946 ATCC 55056

 Score =  479 bits (1233), Expect = e-140
 Identities = 240/439 (54%), Positives = 311/439 (70%), Gaps = 5/439 (1%)

Query: 1   MALVPRDAHSISRKQISENALKVLYRLNKAGFQAYLVGGGVRDLLLGLEPKDFDVVTNAT 60
           + ++PR  H ISR+QISENALKVLYRL+ AGF+A+LVGGGVRDLLLG +PKDFDV TNAT
Sbjct: 19  LTIIPRQEHPISRQQISENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNAT 78

Query: 61  PEEIKKLFRNCRVVGRRFRLAHIVFGRDVIEVATFRGHHGESNEK--ISKANAEGRLLRD 118
           PE++++LFRNCR++GRRFRLAHI+FGRD++EVATFRGHH ES++   I+  +  G LLRD
Sbjct: 79  PEQLRQLFRNCRLIGRRFRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRD 138

Query: 119 NVYGEIDEDAERRDFTVNALYYDISDYSIRSYGGGMEDLKAGTLRLIGDPETRYREDPVR 178
           NVYG IDEDAERRDFT+NA+YY+I+DYSI  Y GGMEDL+   +RLIGDPETRYREDPVR
Sbjct: 139 NVYGTIDEDAERRDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVR 198

Query: 179 MLRAVRFATKLSMTIDEVTAKPIKQLAPLLKDIPAARMYEEVLKLFFAGKAVANFDMMQE 238
           MLRAVRFA KL   I+E TA PI+QLAPLL+DIPAAR+YEE LK+  AG  +  + +M++
Sbjct: 199 MLRAVRFAVKLDFDIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQ 258

Query: 239 YKLFAPLFPQVDALLKEAPKGPAMKMVQAIMKSTDDRVNEDKPVTPSFFYAAILWYPLRQ 298
           Y LF  LFP +             +M+  ++ +TD RV ED  + P+F +AA+LWYP+  
Sbjct: 259 YNLFQQLFPTIAEHFTADHSSKTEQMLDLVLDATDIRVEEDLRINPAFMFAAMLWYPMID 318

Query: 299 RAEDIAVESGLTLYDAFFAAMGDVMEQQCQTISIPRRFSTPAKDIWQLQLRFERSQGTRA 358
            A+ +     L  +DA   A   ++++  + I+IPRR +T  +DIWQLQ R  R  G RA
Sbjct: 319 LADRLMESLDLNEFDAITEASNRILDEVVKRIAIPRRHTTTVRDIWQLQQRLPRRSGKRA 378

Query: 359 FKLLEHPKFRAAYDLLLLRGEVEGGNLAKSAAWWQQFVEADETERLTIARSGNKASGNRN 418
           F+LLE  KFRA +D L +RGE+EGG   + A WW  F  A    R  +      A+G+  
Sbjct: 379 FRLLELNKFRAGFDFLEMRGEIEGGETKQLAEWWATFQSAGRNMRQAMVGDIGNATGSSK 438

Query: 419 RNTPQRRRRRPSGAKAKAE 437
                 RRR+PS  K+K++
Sbjct: 439 SGA---RRRKPSRNKSKSK 454