Pairwise Alignments

Query, 438 a.a., polyA polymerase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 520 a.a., polynucleotide adenylyltransferase PcnB from Ralstonia sp. UNC404CL21Col

 Score =  355 bits (911), Expect = e-102
 Identities = 200/454 (44%), Positives = 276/454 (60%), Gaps = 40/454 (8%)

Query: 7   DAHSISRKQISENALKVLYRLNKAGFQAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKK 66
           D H I  K +S NA+KV   L  AG+ A++VGG VRDLLLG++PKDFDV TNATP++++ 
Sbjct: 60  DEHGIDPKLLSRNAVKVTSTLQDAGYAAFIVGGAVRDLLLGIKPKDFDVATNATPDQVQA 119

Query: 67  LFRNCRVVGRRFRLAHIVF--GRD--VIEVATFRG----------------HHGESNEKI 106
           LFR  R++GRRF++ H+ F  GRD  +IEV+TFR                    E +   
Sbjct: 120 LFRRSRIIGRRFQIVHVTFYGGRDQEIIEVSTFRALVDAVDAEQVPAGKRVKRTELDHHT 179

Query: 107 SKANAEGRLLRDNVYGEIDEDAERRDFTVNALYYDISDYSIRSYGGGMEDLKAGTLRLIG 166
              +A GR+LRDNV+G   EDA RRDFTVNA+YY+ +D ++  Y  GMED++A TLR+IG
Sbjct: 180 HAVDASGRVLRDNVWGTQAEDATRRDFTVNAMYYNPADETVHDYHHGMEDMRARTLRMIG 239

Query: 167 DPETRYREDPVRMLRAVRFATKLSMTIDEVTAKPIKQLAPLLKDIPAARMYEEVLKLFFA 226
           DP TRYREDPVRMLR VRFA K    ID  T  PI +L PL+ ++PAAR+++E+LKL  +
Sbjct: 240 DPHTRYREDPVRMLRVVRFAAKTGFDIDPDTRAPIAELGPLIHNVPAARLFDEMLKLLMS 299

Query: 227 GKAVANFDMMQEYKLFAPLFPQVDALLKEAPKGPAMKMVQAIMKSTDDRVNEDKPVTPSF 286
           G A A+   +++  L   L P +D  L E P G   + VQ  + +TDDRV   KPV+P F
Sbjct: 300 GHAWASLQELRKAGLHRGLLPLLDVAL-EQPMG--QRFVQLALDNTDDRVKAGKPVSPGF 356

Query: 287 FYAAILWYPL-----RQRAEDIAVESGLTLYDAFFAAMGDVMEQQCQTISIPRRFSTPAK 341
            +A++LW+ +     R+RA      +G  L  A   AM +V+++Q + ++I RRF++  K
Sbjct: 357 LFASLLWHHVVEHWNRRRA------AGEPLIPALHTAMDEVLDRQTEQLAIQRRFTSDMK 410

Query: 342 DIWQLQLRFERSQGTRAFKLLEHPKFRAAYDLLLLRGEVEGGNLAKSAA-WWQQFVEADE 400
           +IW +Q RFE+  G   ++LLE P+FRA YD L+LR     G L +  A WW  F   D 
Sbjct: 411 EIWSMQPRFEKRSGRMPYRLLESPRFRAGYDFLVLR--CASGELPQELADWWTDFQNGDG 468

Query: 401 TER---LTIARSGNKASGNRNRNTPQRRRRRPSG 431
             R   +  A+     S N    +P +RRRR  G
Sbjct: 469 EAREALMAQAKHAPSPSANAGPASPGKRRRRRRG 502