Pairwise Alignments

Query, 339 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 374 a.a., response regulator containing a CheY-like receiver domain and an HD-GYP domain from Dechlorosoma suillum PS

 Score =  255 bits (652), Expect = 1e-72
 Identities = 144/356 (40%), Positives = 206/356 (57%), Gaps = 38/356 (10%)

Query: 1   MMDKATILVVDDTPENIDILVGILGEDYKVKVAIDGPRA-LALVTKTLPDLILLDVMMPG 59
           M  +  +++ DD  EN+ +L  +L EDY+V+   DG    L L      D+ LLD++MP 
Sbjct: 1   MTSRPILVIADDQAENLLLLEAMLQEDYEVRTFPDGTDVQLYLKQGGRADIFLLDIVMPH 60

Query: 60  MNGYEVCKLLKQEPLTCHIPVIFVTALSEVADEAQGFALGAVDYITKPVSAPVVKARVKT 119
           ++G+ +C+ +K    T  +PVIF+TAL     EA+G ALGAVD+I KP S P +KAR++T
Sbjct: 61  LDGFSLCRQIKANATTRELPVIFITALDSPDVEARGLALGAVDFIHKPFSMPGIKARLRT 120

Query: 120 HLALYDQKRLLEQQ-------VKERTQELEETRFEIIRRLGRA--------------AEY 158
           HL L    R L +Q       V +RT+E  E   E+++R  +               AE 
Sbjct: 121 HLQLAATSRQLREQNENLEALVAQRTREYMEQTRELLQRKQQVISGQEATIRAFCSLAEA 180

Query: 159 KDNETGLHVVRMSHYARLLAIKL--------GLPSTFCELLYNASPMHDIGKIGTPDAVL 210
           +DNETG H+ R  +Y R+L ++L         L      LLY ++P+HDIGK+G PD +L
Sbjct: 181 RDNETGNHIRRTQNYVRILGLELQDHPDFRHHLDDQVVTLLYKSAPLHDIGKVGIPDRIL 240

Query: 211 KKPGKLDAEEWKIMQQHAVIG-------AEIIGEHGDPLLQMARRIALTHHEKWDGTGYP 263
            KPGKLDA EW+IM++H  IG       A+ +GE  D  L+    IA  HHE WDG GYP
Sbjct: 241 LKPGKLDAAEWEIMREHCRIGRDAISQVAKEVGEDND-FLRYGMEIAYGHHEHWDGGGYP 299

Query: 264 NGLSEENIPIEGRIVAIADVFDALTSQRPYKQPWTIEATMELLENQAGQHFDPKLV 319
             +  E+IP+  R++A+ADV+DAL S+R YK P   +  +  +  QAG+HFDP +V
Sbjct: 300 QAIKGEDIPVSARLMAVADVYDALISRRVYKPPMPHDEALAYIVGQAGRHFDPTVV 355