Pairwise Alignments

Query, 339 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 354 a.a., chemotaxis protein CheY from Burkholderia phytofirmans PsJN

 Score =  309 bits (792), Expect = 6e-89
 Identities = 164/343 (47%), Positives = 220/343 (64%), Gaps = 9/343 (2%)

Query: 3   DKATILVVDDTPENIDILVGILGED--YKVKVAIDGPRALALVTKTLPDLILLDVMMPGM 60
           D A ILVVDD P N+ +L  +LG +  +++    D  + L    +  PDLILLD+ MP +
Sbjct: 6   DDAHILVVDDEPANLKLLEKLLGSEGYFRLTCVQDPRQVLRAYQEIRPDLILLDINMPHL 65

Query: 61  NGYEVCKLLKQEPLTCHIPVIFVTALSEVADEAQGFALGAVDYITKPVSAPVVKARVKT- 119
           +GY+V   LK        P++ +TA        +  A GA D++ KP     +  RV+  
Sbjct: 66  DGYQVMAQLKALDDPLLPPIVVLTAEHGRERLLKALAAGARDFVGKPFDRSELLMRVRNL 125

Query: 120 ------HLALYDQKRLLEQQVKERTQELEETRFEIIRRLGRAAEYKDNETGLHVVRMSHY 173
                 H  +++   +LE++V+ RT+EL ETR +++RRLGRAAEY+DNETG H++RMSH 
Sbjct: 126 LDAHLAHRLMHEHNDVLEKRVQARTRELLETRLQMVRRLGRAAEYRDNETGRHILRMSHT 185

Query: 174 ARLLAIKLGLPSTFCELLYNASPMHDIGKIGTPDAVLKKPGKLDAEEWKIMQQHAVIGAE 233
           A LLA  LG      EL+ +ASPMHDIGKIG PDAVL KPGKLDA EWKIMQQH  IGAE
Sbjct: 186 AALLARHLGWSEADVELMLHASPMHDIGKIGIPDAVLLKPGKLDAGEWKIMQQHPAIGAE 245

Query: 234 IIGEHGDPLLQMARRIALTHHEKWDGTGYPNGLSEENIPIEGRIVAIADVFDALTSQRPY 293
           ++G     L+ MAR+IAL HHEKWDG+GYP GL+ E IP   RIV +ADVFDAL S RPY
Sbjct: 246 LLGGDDSALMTMARQIALAHHEKWDGSGYPQGLAGEAIPQAARIVGVADVFDALVSARPY 305

Query: 294 KQPWTIEATMELLENQAGQHFDPKLVEEFKQILPEVIAIRNTY 336
           K  W  +  +  + + +G HFDP +VE F + L +++AI+ +Y
Sbjct: 306 KPAWPRDEAVAYIRDHSGSHFDPTVVEVFMKALDDILAIQESY 348