Pairwise Alignments

Query, 1765 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  533 bits (1374), Expect = e-155
 Identities = 332/885 (37%), Positives = 508/885 (57%), Gaps = 44/885 (4%)

Query: 889  VTERKSIEEELAVSEAHFKALFDGATIGIVNVDIKGLILDCNYQFCEDMGLSRDELRSTP 948
            + ERK +E+     E     + D     +  +   G  L  N +F + MGL  +E+    
Sbjct: 462  LAERKVLEQSQLNQE-----ILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVIDKE 516

Query: 949  IFDVLSAQDKDVAKAQFKELVEGKIDHYRGERSFVRPSGEPLWMTVNVSTLLDSQNQFES 1008
              ++  A+  +   A  + L + +      E S V  +G    M V  ++  D  ++   
Sbjct: 517  PQEIFPAEVAERFAAAHQVLTQQQSSQ-NYEVSLVDYTGVQREMLVYEASFSDRADKVNG 575

Query: 1009 AVVSMVDMTELKLLSDELLVAKDEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT 1068
             V  ++DMTE K + DEL  AK+ ADA S+AKGDFLANMSHEIRTPMNAI+GM+ L L T
Sbjct: 576  IVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT 635

Query: 1069 QLDKKQKNYLEKIERASQSLLSIINDILDFSKIEAGKLDIENVSFQLDTMLEDLSDMFSE 1128
             LD  Q+ Y+ +I  ++++LL IINDILDFSK+EAGKL++E + F LD +L++++ + S 
Sbjct: 636  PLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSL 695

Query: 1129 RAAQKQIELLFAVAPNVPRHLLGDPLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQND 1188
            +A +K IE L  + P++P  L+GDPLRLGQV++NL  NA+KFT +GE++LS  + +    
Sbjct: 696  KAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQ 755

Query: 1189 DVVLRFSVRDSGIGLTQEQQSKLFKSFTQADTSTTRKYGGTGLGLAISKQLVELMGGSIG 1248
             V LRF+V+D+GIG+ Q++   LF +F+QAD S TR+YGGTGLGL+ISKQLVELMGG I 
Sbjct: 756  QVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQIT 815

Query: 1249 VESQLGHGSTFFFTVKLCISSGQKLFVGQELDGMS---ILVADDNATARDIMRTTLESMG 1305
            V S+ G GSTF F+V   +   +   + Q + G++   +LV DDN +AR I+ + L +M 
Sbjct: 816  VHSEEGKGSTFEFSVVCGLQDAKMRDISQPVHGLADKRVLVVDDNDSARHILDSLLTAMR 875

Query: 1306 FNVDTVRSGDEAIMRCSQQEYAVALIDWKMPNLDGIETAKQIKQ-QTKNAPRILMVSAHA 1364
            FNV TV +G EA+    Q+ + +  +DW MP ++GIE   ++K    +   +  +V+A+ 
Sbjct: 876  FNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYG 935

Query: 1365 NQDFLTQIEQLGLAGYISKPISASRLLDGIMNALGRSGILPVRRHQDNIAPELLLP-LKG 1423
             +  L       +   I KP++ S LLD I+ + G   +    RH+ N A     P   G
Sbjct: 936  REINLDGENSKLVDALIVKPVNPSNLLDAIVTSYGIEHV----RHKTNEAHHNSRPNFAG 991

Query: 1424 KRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLAQQSFDLVLMDCQMPVMDGY 1483
            + +LLVEDNE+N EVA   L+  G+ + +A +GQ AL++L    FDLVLMD QMPVMDG 
Sbjct: 992  QSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGI 1051

Query: 1484 QATKAIRQRPELAQLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQTLLKYLGA 1543
             AT+ IR  P    LP++AMTANAMA D E CL+AGMNDH++KPIEV+  YQ L  +L  
Sbjct: 1052 TATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL-- 1109

Query: 1544 PVPSLENAEFVVNESLNPLNLD---VESVVKWPEHPELDIDRGLQLVQNSKRLYQRIFDR 1600
                + + +   + S N  +     + +++  P+   +D+++ +  +  +++ Y  I   
Sbjct: 1110 ---QVSDEQSFSSHSPNKPSASKPAMNALLDLPQLTGVDLEQAIFRIGGNQQRYFEILRH 1166

Query: 1601 FATSQRNVVDQINKALASNKREDAVRMAHTLKGLAGNLSSSKLAELARQLELHLSENADY 1660
            F  SQ + ++ +   + +     A R+AHTLKG A NL    LA+LA ++E  L +    
Sbjct: 1167 FIDSQVDELNSVTGLIEAQDWSSATRVAHTLKGSAANLGLEALAQLAAEMEQSLEQQVLP 1226

Query: 1661 QVE-LDQIQILVASICEAIEKAKPQFEETSTSTAEHLPKDALIAA-------LKQLRQSL 1712
              E L Q Q L+  +            +   S  EH  K+ L+A         +QL+Q++
Sbjct: 1227 SFELLQQAQSLLTQV------------DDELSAWEHQHKEPLLAENLDWGLWYQQLQQAI 1274

Query: 1713 EDADSDAVTQMDALKPQMSALLWQQLSPALTMINQYQFDEAVDLI 1757
             D D  A++   +++ Q+S     Q +  ++ I  + F++A  L+
Sbjct: 1275 NDYDVTALSLSKSIR-QVSQWDSAQQAALISAIEDFDFEQAKALL 1318



 Score = 28.1 bits (61), Expect = 0.008
 Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 23/164 (14%)

Query: 750 WFDGSIDDVT----------ESKLAIDEIEASRQQLTNITESIPCTVYQLRWVSPTDRSF 799
           W    +DD++          + +LA  ++    Q    I ++ P  +Y L      D  F
Sbjct: 439 WLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLS----ADGKF 494

Query: 800 TFLSGAALAMLGLHREELLRDFNIIAERIFDEERPEVISA----LAGKSDDQLRWIREFR 855
             ++   L ++GL+  E++   +   + IF  E  E  +A    L  +   Q   +    
Sbjct: 495 LTVNAKFLDLMGLYNNEVI---DKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 551

Query: 856 YRHPNGGIRWMEAGASGHYADDGSIIWNGYVMDVTERKSIEEEL 899
           Y      +   EA  S        I+  G ++D+TERK +E+EL
Sbjct: 552 YTGVQREMLVYEASFSDRADKVNGIV--GILLDMTERKEMEDEL 593