Pairwise Alignments

Query, 1765 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1279 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  536 bits (1380), Expect = e-156
 Identities = 341/881 (38%), Positives = 496/881 (56%), Gaps = 55/881 (6%)

Query: 907  KALFDGATIGIVNVDIKGLILDCNYQFCEDMGLSRDEL--RSTPIFDVLSAQDKDVAKAQ 964
            +A+FD A IGI+    + +I  CN    E +G    E+  +ST I+      D+    A 
Sbjct: 405  QAVFDAARIGIILTRDR-IIRRCNRTIEEILGYEPGEILEQSTRIW----YPDEATFLAV 459

Query: 965  FKELVEGKIDH--YRGERSFVRPSGEPLWMTVNVSTLLDSQNQFESAVVSMVDMTELKLL 1022
             + + EG   H  +R E   VR  G   W  + ++ ++D     +    ++ D+ E + +
Sbjct: 460  GERVREGLTRHGYFREELELVRKDGSRFWGRI-MAQVIDRNAPEKGMAGTVEDIGEERRI 518

Query: 1023 SDELLVAKDEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTQLDKKQKNYLEKIE 1082
              E+  AK  A+AA++AK DFLANMSHEIRTPMNA+IGM+ L L+T LD++Q+ YL KI+
Sbjct: 519  LAEMAQAKALAEAAAQAKADFLANMSHEIRTPMNAVIGMTHLALKTDLDERQREYLRKIQ 578

Query: 1083 RASQSLLSIINDILDFSKIEAGKLDIENVSFQLDTMLEDLSDMFSERAAQKQIELLFAVA 1142
             +SQ LL IINDILDFSK EAGKL IE + F L+ +LED+S + SERA  K +E +  +A
Sbjct: 579  HSSQHLLGIINDILDFSKSEAGKLHIEQIDFDLEKVLEDVSSLMSERATSKGLEFVIEMA 638

Query: 1143 PNVPRHLLGDPLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQNDDVVLRFSVRDSGIG 1202
              VPRHL+GDPLR+GQVLIN  +NA+KFTERGEV + + L E Q  +V+LRF+V D+GIG
Sbjct: 639  DEVPRHLVGDPLRIGQVLINYASNAVKFTERGEVAIHVGLEEDQGQEVLLRFAVHDTGIG 698

Query: 1203 LTQEQQSKLFKSFTQADTSTTRKYGGTGLGLAISKQLVELMGGSIGVESQLGHGSTFFFT 1262
            +   +   LF SF QAD+STTRKYGGTGLGL I+K+L ELMGG +G ES+ G GSTF+FT
Sbjct: 699  IKAGELPTLFNSFQQADSSTTRKYGGTGLGLVIAKRLAELMGGQVGAESEPGRGSTFWFT 758

Query: 1263 VKLCISSG--QKLFVGQELDGMSILVADDNATARDIMRTTLESMGFNVDTVRSGDEAIMR 1320
             +L  SS    +     +L    +LV DD+  ARD++   L SM F V    SG+  +  
Sbjct: 759  ARLGRSSNARHRAPPRPDLRTRRLLVVDDHDHARDVVCDMLRSMSFQVSDTDSGNRCLAE 818

Query: 1321 CSQ-----QEYAVALIDWKMPNLDGIETAKQIKQ-QTKNAPRILMVSAHANQDFLTQIEQ 1374
              +     + Y +  +DW+MP +DG+ TA++I++ +    P +LM++A+   +      +
Sbjct: 819  LQRASAAGEPYDIVFLDWQMPEMDGLATAREIRRLELPQPPLVLMITAYGRDELARSAGE 878

Query: 1375 LGLAG---YISKPISASRLLDGIMNALGRSGILPVRRHQDNIAPELLLPLKGKRILLVED 1431
             GL G    + KP+S S+L + +M  L      P         P+ L PL G R+LLVED
Sbjct: 879  SGLQGIEEILIKPVSPSQLFNTVMRILDHED-GPHSAADPEALPD-LAPLAGLRVLLVED 936

Query: 1432 NEMNLEVATEFLEQVGIILSIATNGQIALDKLAQQSFDLVLMDCQMPVMDGYQATKAIRQ 1491
            N++N EVA+EFL    +++ +A +G  AL+K+ QQ +D++LMD QMPVMDG  AT+ IR+
Sbjct: 937  NQLNQEVASEFLAGANMVVDVADDGASALEKVRQQRYDVILMDMQMPVMDGIAATREIRR 996

Query: 1492 RPELAQLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQTLLKYLGAPVPSLENA 1551
            +   A LP++AMTANAM  D+E CL AGMNDHIAKP++   L   LLK+L    P     
Sbjct: 997  QFPAAVLPILAMTANAMEQDRERCLAAGMNDHIAKPVDPRDLLGKLLKWLAPGAP----- 1051

Query: 1552 EFVVNESLNPLNLDVESV--VKWPEH---------PELDIDRGLQLVQNSKRLYQRIFDR 1600
              V  ++  PL   V     V  P           P LD   GL    + + LY R+ D+
Sbjct: 1052 -LVAPQAAAPLPGTVTPTPPVAAPAKADRQPFAGIPGLDATLGLHQALDREGLYLRLMDK 1110

Query: 1601 FATSQRNVVDQINKALASNKREDAVRMAHTLKGLAGNLSSSKLAELARQLELHLSENADY 1660
            F + QR+   ++ +A+ +     A R AHTLKG++  + +  L +LA  LE H     D 
Sbjct: 1111 FVSGQRDAPQRLARAIDAGDWVGAEREAHTLKGVSAQIGAMPLRDLAEGLE-HAIRQRD- 1168

Query: 1661 QVELDQIQILVASICEAIEK--------AKPQFEETSTSTAEHLPKDALIAALKQLRQSL 1712
                D +Q L+  I +++             Q    + +T   +  + + A   +L Q L
Sbjct: 1169 --PPDLLQDLLGKIADSLPPLVDAIAAVLATQEVPAAKATVNWMQVEEVCA---RLAQQL 1223

Query: 1713 EDADSDAVTQMDALKPQMSALLWQQLSPALTMINQYQFDEA 1753
             + D      +D  +  +   L +   P    +  + F +A
Sbjct: 1224 ANDDFACEKLLDEHEALLHGALGEDFPPLARAVRDFDFTQA 1264



 Score = 48.1 bits (113), Expect = 7e-09
 Identities = 35/129 (27%), Positives = 51/129 (39%)

Query: 261 GQAGQASFVDDKGTVYLASVAEVAKLKWRVVVMVPKHELFASLLDDIASAILNLSLLTLL 320
           G  G    VD KG   +++ A V    W VV  +P  E FA             +L+TLL
Sbjct: 248 GYTGPGQTVDSKGLEVVSAAAMVPTANWMVVSYLPTREAFAPQERATMRIYSGAALITLL 307

Query: 321 LLLTCYIAAKRLTRPLEALESGILAFGQGKAQELTIPKGAVSEIVTLSETFNQMAALLAE 380
           + L  ++  +R   PLE     I   G G      +      EI  L + FN +   +A 
Sbjct: 308 VALLVWLGVRRSLAPLERAARQIGETGAGHIPLEPVEVQGSGEIRMLLQNFNLLQQHIAA 367

Query: 381 REQAILDSR 389
           + + I   R
Sbjct: 368 QNETIRQER 376



 Score = 32.7 bits (73), Expect = 3e-04
 Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 11/140 (7%)

Query: 491 TGELMSVEMLFTDVTEQFSAAAWSNAVLEAAPEAMLIVDQNGQIVFSNSRCQQLFGYDAK 550
           T EL+ +     D  ++        AV +AA    +I+ ++  I   N   +++ GY+  
Sbjct: 387 TAELVGLAKSLRDANQE------QQAVFDAA-RIGIILTRDRIIRRCNRTIEEILGYEPG 439

Query: 551 AMLALQIETLLPEELRHLHTGERLDFLREGRDRPMASARHVRALKSDGGEFVAEIALSIL 610
            +L        P+E   L  GER   +REG  R       +  ++ DG  F   I   ++
Sbjct: 440 EILEQSTRIWYPDEATFLAVGER---VREGLTRHGYFREELELVRKDGSRFWGRIMAQVI 496

Query: 611 PSDFDGRRQVAASIRDMTQK 630
             +    + +A ++ D+ ++
Sbjct: 497 DRNAP-EKGMAGTVEDIGEE 515