Pairwise Alignments

Query, 452 a.a., sodium:alanine symporter family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 458 a.a., sodium:alanine symporter family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  563 bits (1450), Expect = e-165
 Identities = 283/449 (63%), Positives = 355/449 (79%), Gaps = 4/449 (0%)

Query: 2   NFQALLSSLNGIVWGPITLCLLVGTGVYLTTRLKLIQVFRLPMALSLLF---KPAKGHGD 58
           N Q+ L +++ +VWGP  L LLVGTGVY T RL L+Q  RLP AL+++F   K +   GD
Sbjct: 3   NLQSFLQTVDSLVWGPPLLILLVGTGVYFTFRLGLLQFRRLPTALAMVFGREKSSDKQGD 62

Query: 59  LSSFAALCTALSATIGTGNIVGVATAIKMGGPGALFWMWLAAFFGMATKYAECMLAVKYR 118
           +SSFAALCTALSATIGTGNIVGVATAIK+GGPGALFWMWLAA FGMATKYAEC+LAVKYR
Sbjct: 63  VSSFAALCTALSATIGTGNIVGVATAIKLGGPGALFWMWLAALFGMATKYAECLLAVKYR 122

Query: 119 TTDARGQIAGGPMYYIERGLGLRWMAKLFALFGVGVAFFGIGTFAQVNAISDALTIAFDV 178
             D +GQ+ GGPMYY+  G+  + +A LFA+F VGVA FGIGTF QVNAI DA  I+F V
Sbjct: 123 QIDDKGQMVGGPMYYLRDGVSSKTLAVLFAVFAVGVACFGIGTFPQVNAILDATQISFGV 182

Query: 179 PTWTTALVLTLLVAAVTLGGVKRISNVAQKLVPAMSIGYVLACVWILLGFAEAILPALQL 238
           P   +A+VLT+LVA VT+GG++ I+ VA K+VPAM++ Y++AC+ +++  A+ +  A++L
Sbjct: 183 PREASAVVLTVLVAIVTIGGIQSIAKVAGKVVPAMALFYIIACLSVIVTNADKLADAVEL 242

Query: 239 VVESAFTPVSAAGGFLGATVAQAIQMGIARGVFSNESGLGSAPIAAAAAKTNEPVEQGLV 298
           V+ SAFT  +A GGFLGA++  AIQ GIARGVFSNESGLGSAP+AAAAAKT+  VEQGL+
Sbjct: 243 VLVSAFTSTAATGGFLGASIMLAIQSGIARGVFSNESGLGSAPMAAAAAKTDSCVEQGLI 302

Query: 299 SMTGTFFDTIIICTMTGLVLIITGVWSGDTAGAAMTSAAFSLGGSA-AIGQYLVTIALVC 357
           SMTGTFFDTIIICTMTGL LI+TG W  D +GAAMT+ AF+ G +A  IG  LV+I L+ 
Sbjct: 303 SMTGTFFDTIIICTMTGLALILTGAWQSDLSGAAMTTYAFATGLNAQTIGPMLVSIGLMF 362

Query: 358 FAFTTILGWHYYGERCWYYLVGERGLRAYQIVFLGLIAGGAFIKLDVIWLLADTVNGLMA 417
           FAFTTILGW+YYGERC  +L G + +  Y+IVF+GLIA GAF+ LD+IW++AD VNGLMA
Sbjct: 363 FAFTTILGWNYYGERCMVFLFGTKAVLPYKIVFIGLIASGAFLHLDLIWIIADIVNGLMA 422

Query: 418 IPNLIAIIGLRHIIIAETQSYFVRTFTNS 446
           IPNLI ++ LRH+++ ET+ YF   +  S
Sbjct: 423 IPNLIGLVALRHVVVEETKQYFAARYQYS 451