Pairwise Alignments

Query, 897 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 836 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  323 bits (827), Expect = 4e-92
 Identities = 249/869 (28%), Positives = 418/869 (48%), Gaps = 61/869 (7%)

Query: 29  VLKVFFAHYRHAPLQAGAILLGIALAVTLLIGVKATNDNAIRSYSEATELLSQRADVLLT 88
           V+K    HYR  PLQ   + LG+ L V+LL+GV A N +A +SY    +L S      + 
Sbjct: 24  VVKALLGHYRRYPLQICLVWLGLTLGVSLLVGVTAINHHARQSYEHGEKLFSNPLPYRIR 83

Query: 89  SPVGQDNLDESVYFSLRQAGISQSLAVVSGRVAGQNGQYWQIEGSDIVAALTATLTSKNT 148
           S    + + + +Y  LR+ G  Q +     R +  +G    ++G D VA L+        
Sbjct: 84  SKHIANKIPQGLYIQLRRDGFQQCVPFDDYRFSTTSGLDLILQGIDPVALLSI------- 136

Query: 149 SPSSNSKATAN-SAVSMGDLPLAALMSGEPVVVMSDSLASKIAPNGQLSLAQSIAPSTLK 207
               N K  A  S + + + P   ++S E   +        IA      L   +     +
Sbjct: 137 ---DNGKPLAQQSGLQLMNPPYPVMVSQELAKLQDWQEGDYIALTDGSQLGPIVIDRHNQ 193

Query: 208 VIRVDDSWGLGSAILTDISLAQNLLGMQGKLSYIALFSDRDKLAALKQRLDTLGITPDLA 267
           V         G  ++ D+SL + L    G            KL  LK+ L   G+T   +
Sbjct: 194 VT--------GMRVVADLSLVRMLKKGSGLTVIACADMPPAKLDKLKKSLPN-GLTLTRS 244

Query: 268 NYSQQDQGQALMALTRSFHLNLNAMSMLAFVVGLFIAYNGVRYSLMKRQRLLIQLLQQGL 327
             S+      L +LT++FHLNL AM MLAF+VG+FI Y  +  S+++RQ L+  L Q G+
Sbjct: 245 TRSE------LESLTQAFHLNLTAMGMLAFLVGIFIFYQAMSLSMVQRQPLVGTLRQIGV 298

Query: 328 KRLDVMLALLAELLFLVILGSVIGFILGLQLSHWLQPMVAMTLEQLYGAHLLPGI-WQWH 386
               +  ALL ELL LV++  V G +LGL L++ L P VA +L  LY A++   I W W 
Sbjct: 299 NGWQLAKALLIELLVLVLVSWVCGNVLGLLLANQLIPSVASSLGYLYNANVDLAIGWDWS 358

Query: 387 WLAQAIALTLVAALAACLPLYFDLTRQSLAQGANRYQQTKAHNQTHQRQFILACGLLVLA 446
           W + ++ + L+AA A+C      L R    + + R    +   +  + Q +LAC L V A
Sbjct: 359 WSSYSLLMALLAAFASCTWPLVRLLRSQPIRLSARLSLVRFAGKEFKLQALLACALCVAA 418

Query: 447 AILFPFSQSYNTSLILLGIVTVAIPLLLPQVLHWGVSLLLPFTRPGLK-HYLLAETRELI 505
             ++   +S  +   ++G++ +++ L  P ++ W +     +T   +K  +  A+    +
Sbjct: 419 VAIYQAPKSQQSGFAIIGLMLLSVALFTPYII-WTLFTSFSYTLRWVKVRWFFADAAASM 477

Query: 506 APLSLAMMAILLALSANVAMNTLVGSFEQTLRSWLETRLHADLYLRPSANRMADVRDKLS 565
           +   +A MA ++AL+AN+ + T+VGSF  T   WL  RL AD+YL PS +  + +   L 
Sbjct: 478 SYRGVATMAFMVALAANIGVETMVGSFRDTTDRWLSQRLAADIYLYPSNSVASRMSQWLG 537

Query: 566 QDPRVSGLYQQWQVDAEISIQGPTPQTIPVNLISRDDESIKYTSTLKDSLPDLWQRYFGG 625
           Q P V  ++ +W+ D   S QGP  Q +       + +S+    T+K  +P+ W      
Sbjct: 538 QQPEVDAVWWRWEKDF-ASQQGPV-QIVSTGASDGELDSL----TVKLGVPNYWYHLHHA 591

Query: 626 QFVLVSEPMAIKYQLMLGDKVTLNVLDKTTNNQVVIAGIYYDHGNTRNELIISHQLWQQA 685
           + V++SE MA+K  +  GD +    L +   +   + G+YYD+GN  +++++SHQ W +A
Sbjct: 592 RGVMISESMALKLGIRPGDLID---LPEPMGSGWAVFGVYYDYGNPYHQVMMSHQNWMKA 648

Query: 686 QLPLLPISLAASFYPLGQANKSSSSVLTQPIPTNGKRSEAELDELQMQLATELELAQAQI 745
                           G  N + + VL + +           + ++ +L T   L   +I
Sbjct: 649 F--------------AGTGNVALAVVLKEGLTG---------ESVKKRLDTIFRLDADRI 685

Query: 746 YSQANIKAQAIAMFKRTFSITLVLNSLTLLVAAIGLFSACLMLTQARQAPLARLYSLGVS 805
           +   NI + A+ +F RTFSI   L ++TL +A  G+F + L    +R   ++ L  LGVS
Sbjct: 686 FDNTNIHSHAMRVFDRTFSIAGTLGNITLFIAVCGIFFSTLAGETSRLRHISLLRCLGVS 745

Query: 806 RSKLRTMVFSQMLLVVVITCLIAMPTGALLGYLLIDKITLQAFGWTIPMIWDWFAYTKAI 865
             +L  +   Q+ +   I+ LIA+P G  L  L+ID +   +FGWT+ +      Y   +
Sbjct: 746 GKELVLIGGMQLFVFGAISLLIALPLGLTLAKLVIDVVIKHSFGWTMQLQMVPGEYVYTV 805

Query: 866 LIALVTCTLAVLLPLYWQTRRPLIASLQQ 894
           + +++   LA  LP+    R+  + SL++
Sbjct: 806 VWSMMALILAGALPIIRLARKSPMKSLRE 834