Pairwise Alignments

Query, 425 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 412 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  446 bits (1146), Expect = e-130
 Identities = 231/422 (54%), Positives = 282/422 (66%), Gaps = 44/422 (10%)

Query: 28  ARLISQLIIGGLLLFMISGCDNAPASVSESKSMGALLGQTKEGETTSTQQAFAKVTPEHQ 87
           A +++ L++  L+L    GCD   A   ESK MG L+G  +  +T + Q  + KV P   
Sbjct: 11  ALMLTTLLLPSLMLL---GCD---APKPESKGMGDLMGSGEGTDTDAEQSGYTKVIPGKP 64

Query: 88  FHFPQDHLAHNGFRQEWWYLTANLTTEKGEQLGAQWTQFRVALKPQYTES---------- 137
             FP+DHLAH+ FRQEWWYLTANLTT+ GE LG QWTQFR+AL P   ES          
Sbjct: 65  LSFPKDHLAHDDFRQEWWYLTANLTTDTGEPLGLQWTQFRIALSPSALESPESPGTKESP 124

Query: 138 ------------QNAQPTTLK--SAWATEQLYFAHSALTSSAAHLAHEKWSRGHPKLAGV 183
                       +  +P  LK  ++WAT+QLY AHSA+T+S  H A E+WSR HPKLAG 
Sbjct: 125 TSETPKPEKLKPEKPKPEKLKPETSWATKQLYMAHSAVTTSEIHKASERWSRAHPKLAGT 184

Query: 184 NANPYQIHLDNWQLQSESNALFPAILRVETADFSYELTLTSQAPLQYQGDNGYSIKNREG 243
            A+P  I LD+W+ QSE + LFPA L V + DFSY+LTL+S+AP Q QGD GYSIK+ +G
Sbjct: 185 KASPLSIALDDWRWQSEGDDLFPATLTVNSDDFSYQLTLSSRAPYQRQGDEGYSIKSADG 244

Query: 244 NVASYYYSQPFITITGQITRHININGQAENRVEKVTGQGWLDREWSSQFLTKSQQGWDWF 303
            VASYYYSQPFI ITG +T    +NG    +V  V+GQGWLDREWSSQFLT+ QQGWDWF
Sbjct: 245 EVASYYYSQPFIAITGSVT----LNG----KVHSVSGQGWLDREWSSQFLTRQQQGWDWF 296

Query: 304 ALRLNDGSALMLFQLREQSTDKTQTPSAFYSARRMFADGTGRNINSRDTPDGIKMTPLGW 363
           ALRL+D S LMLFQLR Q       P  F+SARRMFADG+GRNI S     GI+M    W
Sbjct: 297 ALRLDDASTLMLFQLRSQPLSSQDRP--FFSARRMFADGSGRNIAS----SGIRMKATEW 350

Query: 364 QTTRTGKYPVSWQVQIPSEQIDIRISPLNPNSAMALSTSYWEGPIKLSGSHTGMGYMELT 423
           Q      YP++WQ+ IP EQ+++ ISPLNP+S M LS  YWEGPI++SGSH G GYMELT
Sbjct: 351 QKIDGANYPIAWQIAIPGEQLNLNISPLNPDSLMPLSVRYWEGPIQVSGSHRGQGYMELT 410

Query: 424 GY 425
           GY
Sbjct: 411 GY 412