Pairwise Alignments

Query, 826 a.a., periplasmic nitrate reductase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 829 a.a., periplasmic nitrate reductase subunit alpha from Vibrio cholerae E7946 ATCC 55056

 Score = 1293 bits (3346), Expect = 0.0
 Identities = 605/828 (73%), Positives = 700/828 (84%), Gaps = 4/828 (0%)

Query: 1   MSISRREFLKANAAVAAATAVGVTLPVK---MVEAAESDNIKWDKAPCRFCGVGCSVLVG 57
           M ++RR F+KANAA +AA   G+TLP     ++ +++   I WDKAPCRFCG GCSVLVG
Sbjct: 1   MKMTRRAFVKANAAASAAAVAGITLPASATNLIASSDQTAIHWDKAPCRFCGTGCSVLVG 60

Query: 58  TKAGKVVATKGDPESPVNRGLNCIKGYFLSKIMYGKDRLTTPLLRMKDGKYHKEGEFTPV 117
           T+ G+VVAT+GDPE+PVN+GLNCIKGYFLSKIMYG+DRL TPLLRMKDG+YHK+GEFTPV
Sbjct: 61  TQDGRVVATQGDPEAPVNKGLNCIKGYFLSKIMYGQDRLKTPLLRMKDGQYHKDGEFTPV 120

Query: 118 SWDVAFDTMAAKWKHSIATKGPTSVGMFGSGQWTIWEGYAASKLHKAGFLTNNIDPNARH 177
           SWD AFD MA KWK S+ TKGPTSVGMFGSGQWT+ EGYAA KL KAGF +NNIDPNARH
Sbjct: 121 SWDTAFDVMAEKWKASLKTKGPTSVGMFGSGQWTVMEGYAAVKLMKAGFRSNNIDPNARH 180

Query: 178 CMASAVVGFMRTFGIDEPMGCYDDLEAADHFVLWGANMAEMHPILWARLSDRRLSSKDCR 237
           CMASAVVGFMRTFGIDEPMGCYDD E AD FVLWG+NMAEMHP+LW R++DRRLS    +
Sbjct: 181 CMASAVVGFMRTFGIDEPMGCYDDFEHADAFVLWGSNMAEMHPVLWTRITDRRLSHPHVK 240

Query: 238 VHVLSTFENRSFDLADNPMVFHPQSDLVILNYIANYIIQNKAVNTDFVTKHTKFALGVDD 297
           V+VLST+ +RSF+LAD+  +FHPQSDL I N+IANYIIQN AVN DFV KHT F   V D
Sbjct: 241 VNVLSTYYHRSFELADHGYIFHPQSDLAIANFIANYIIQNDAVNWDFVNKHTHFKQAVTD 300

Query: 298 IGYGLRPDHPLEKKAKNPGNGKSTPISFDEYAKFVSTYTLEYAAKMSGVEPEKLETLAKA 357
           IGYGLR DHPL+KKAKN  +G  + ISF+EY K V+ YT+E A+++SGV P+KL TLAK 
Sbjct: 301 IGYGLRDDHPLQKKAKNANSGDVSDISFEEYKKSVAPYTVEKASEISGVSPDKLITLAKQ 360

Query: 358 YADPKAKVMSLWTMGINQHVRGVWANNMLYNIHLLTGKIATPGNSPFSLTGQPSACGTAR 417
           YADP  KVMSLWTMG+NQH RGVW  +++YN+HLLTGKIATPGNSPFSLTGQPSACGTAR
Sbjct: 361 YADPNTKVMSLWTMGMNQHTRGVWMQSLVYNLHLLTGKIATPGNSPFSLTGQPSACGTAR 420

Query: 418 EVGTFAHRLPADMVVDNDKHRAITEKMWQVPEGTIPPKPGYHAVLQSRMLKDGKLNCYWT 477
           EVGTFAHRLPADMVV N KHRAI EK+W++PEGTIP KPG+HAV Q RMLKDG LNCYW 
Sbjct: 421 EVGTFAHRLPADMVVANPKHRAIAEKVWKLPEGTIPEKPGFHAVQQDRMLKDGVLNCYWV 480

Query: 478 MCTNNMQAGPNINEEMYPGFRNPENFIVVSDPYPTVTAMAADLILPTAMWVEKEGAYGNA 537
            C NNMQAGPNINEE  PG+RNPENFIVVSD YPTVTA AADL+LPTAMWVEKEGAYGNA
Sbjct: 481 QCNNNMQAGPNINEERLPGYRNPENFIVVSDAYPTVTAQAADLVLPTAMWVEKEGAYGNA 540

Query: 538 ERRTHMWHQQVKAPEGAKSDLWQLVEFSKRFKVAEVWPAELIAKKPEYADKTLYEVLFAN 597
           ERRT +W+QQVK    + SD WQ++EFSKRFKV +VWP EL+AK P+Y  KTLY+VLF N
Sbjct: 541 ERRTQVWYQQVKTVGESHSDSWQVIEFSKRFKVEDVWPEELLAKAPQYRGKTLYDVLFKN 600

Query: 598 GVINKFPTTDCKGDLNDESEHFSFYVQKGIFEEYAAFGRGHGHDLAEFDRYHETRGLRWP 657
           G ++KFP ++ + +LND++ HF FY+QKG+FEEYA FGRGHGHDLA +D YH+ RGLRWP
Sbjct: 601 GQVDKFPLSEAR-ELNDDAHHFGFYIQKGLFEEYAEFGRGHGHDLAPYDVYHQVRGLRWP 659

Query: 658 VVNDKETLRRFVEGSDPYVKAGEGYNFYGKPDGKAVIFALPYEPAAEEPNSEYDLWMSTG 717
           VV+ KET  RF EGSDPY KAG G++FYGKPDGKA I + PYE   E PN EYDLW+ TG
Sbjct: 660 VVDGKETKWRFKEGSDPYAKAGSGWDFYGKPDGKAWIISSPYEAPPEMPNEEYDLWLCTG 719

Query: 718 RVLEHWHTGSMTARVPELYRAYPDAQIFMHPEDAKARGLQRGDEVLVASPRGEIKTRVET 777
           RVLEHWHTG+MT RVPELY+A PDA  FMH EDA+ARGL+RGDEVL+++ RGE++ RVET
Sbjct: 720 RVLEHWHTGTMTRRVPELYKAVPDALCFMHHEDAQARGLRRGDEVLISNSRGEVRVRVET 779

Query: 778 KGRNKPPRGVVFMPFFDARQLVNKLILDATDPLSKETDFKKCPVKVMK 825
           +GRNKPP+G+VF+PFFDAR LVNKLILDATDPLSK+TDFKKCPVK+ K
Sbjct: 780 RGRNKPPKGLVFVPFFDARILVNKLILDATDPLSKQTDFKKCPVKITK 827