Pairwise Alignments

Query, 826 a.a., periplasmic nitrate reductase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 951 a.a., formate dehydrogenase from Vibrio cholerae E7946 ATCC 55056

 Score =  127 bits (319), Expect = 3e-33
 Identities = 135/589 (22%), Positives = 228/589 (38%), Gaps = 91/589 (15%)

Query: 1   MSISRREFLKANAAVAAATAVGVTL----PVKMVEAAESDN---IKWDKAPCRFCGVGCS 53
           + ISRR F+K  +  A   AVG +L     ++  +A+E D     +  +  C  C VGC 
Sbjct: 17  LGISRRAFMKNTSLAAGGAAVGASLFTPGMIRKAQASEVDRSAKTEVKRTICSHCSVGCG 76

Query: 54  VLVGTKAGKVVATKGDPESPVNRGLNCIKGYFLSKIMYGKDRLTTPLLRMKDGKYHKEGE 113
           +    + G     +   + P N G +C KG  L +  +G+ RL  P+ +++ GK+ K   
Sbjct: 77  IYAEVQNGVWTGQEPAFDHPFNAGGHCAKGAALREHGHGERRLKYPM-KLEGGKWKK--- 132

Query: 114 FTPVSWDVAFDTMAAKWKHSIATKGPTSVGMFGSGQWTIWEGYAASKLHKAGFLTNNIDP 173
              +SW+ A + +  K        GP SV   GS + +  + Y   K+    + TNN+D 
Sbjct: 133 ---ISWEQAINEIGDKALKIREESGPDSVYFLGSAKHSNEQAYLFRKMASL-WGTNNVDH 188

Query: 174 NARHCMASAVVGFMRTFGIDEPMGCYDDLEAADHFVLWGANMAEMHPILWARLSDRRLSS 233
            AR C ++ V G   T+G       ++D+      +  G+N AE HP+    +   +   
Sbjct: 189 QARICHSTTVAGVANTWGYGAMTNSFNDMHNCKSMLFIGSNPAEAHPVAMQHILIAK-EK 247

Query: 234 KDCRVHVLSTFENRSFDLADNPMVFHPQSDLVILNYIANYIIQNKAVNTDFVTKHTKFAL 293
             C++ V      R+   AD  +   P SD+  +  +  ++ +N   + +++ +      
Sbjct: 248 NSCKIVVADPRRTRTAAKADYFVSLRPGSDVAFIWGVLWHVFKNNWEDKEYIRQRV---- 303

Query: 294 GVDDIGYGLRPDHPLEKKAKNPGNGKSTPISFDEYAKFVSTYTLEYAAKMSGVEPEKLET 353
                                           DE    V+ +T     +++GV  E++  
Sbjct: 304 -----------------------------FGMDEIRAEVAKWTPAEVERVTGVSEEEVYN 334

Query: 354 LAKAYADPKAKVMSLWTMGINQHVRGVWANNMLYNIHLLTGKIATPGNSPFSLTGQPSAC 413
            AK  A+ +   + +W MG  QH  G         + L  G I   G       G  +  
Sbjct: 335 TAKTLAENRPGCV-VWCMGGTQHTTGNNNTRAYCILELALGNIGKSGGGANIFRGHDNVQ 393

Query: 414 GTAREVGTFAHRLPA--DMVVDNDKHRAITEKMWQV---------PEGT----------- 451
           G A ++G  +  LP    +   + KH A    +W V          +GT           
Sbjct: 394 G-ATDLGVLSDTLPGYYGLTEGSWKHWA---SVWGVDFEWIKNRFDQGTYNGALPMETPG 449

Query: 452 IPPKPGYHAVLQSRMLKDGKLNC----YWTMCTNNMQAGPNINEEMYPGFRNPENFIVVS 507
           IP       VL+++     + N     YW    N+   G  + + M        + +V+ 
Sbjct: 450 IPVSRWIDGVLENKDNLQQRENIRAMFYWGHAVNSQTRGVEMKKAM-----QKLDMMVIV 504

Query: 508 DPYPTVTAMAAD-----LILPTAMWVEKEGAYGNAERRTHMWHQQVKAP 551
           DPYPTV A+  D      +LP     E  G+   A  R+  W  QV  P
Sbjct: 505 DPYPTVAAVMNDRTDGVYLLPATTQFETYGSV-TASNRSIQWRDQVIEP 552



 Score = 47.8 bits (112), Expect = 3e-09
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 6/108 (5%)

Query: 689 DGKAVIFALP--YEPA-AEEPNSEYDLWMSTGRVLEHWHTGSMTARVPELYRAYPDAQIF 745
           D +A IF +P  Y+   A++ + EY + +++GR++E+   G  T   P L     +  + 
Sbjct: 791 DDQAFIFRVPTLYKSIQAQDKSVEYPIILTSGRLVEYEGGGEETRSNPWLAELQQEMFVE 850

Query: 746 MHPEDAKARGLQRGDEVLV-ASPRGEIKTRVETKGRNKPPRGVVFMPF 792
           ++P+DA   G   GD V V  + +G IK +     R KP  G+ F+PF
Sbjct: 851 VNPKDANDLGFMDGDMVWVEGAEKGRIKVKAMVTRRVKP--GMAFLPF 896