Pairwise Alignments

Query, 826 a.a., periplasmic nitrate reductase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 674 a.a., formate dehydrogenase H subunit alpha selenocysteine-containing from Methanococcus maripaludis S2

 Score =  267 bits (682), Expect = 2e-75
 Identities = 216/782 (27%), Positives = 337/782 (43%), Gaps = 119/782 (15%)

Query: 45  CRFCGVGCSVLVGTKAGKVVATKGDPESPVNRGLNCIKGYFLSKIMYGKDRLTTPLLRMK 104
           C +CG GC V +  K G +V T      PVN G  CIKG +  + ++  DRL TPL+R  
Sbjct: 10  CPYCGTGCGVDLVVKDGTLVGTNPFKRHPVNEGKTCIKGSYCHEFVHRDDRLKTPLIR-- 67

Query: 105 DGKYHKEGEFTPVSWDVAFDTMAAKWKHSIATKGPTSVGMFGSGQWTIWEGYAASKLHKA 164
                K GE    SWD A + ++ K    +    P  VG F S + T  + Y   K  + 
Sbjct: 68  -----KNGELVEASWDEALELISGK----LQNYSPEEVGFFSSARCTNEDNYVFQKFART 118

Query: 165 GFLTNNIDPNARHCMASAVVGFMRTFGIDEPMGCYDDLEAADHFVLWGANMAEMHPILWA 224
              TNN+D  AR   ++ VVG  + FG         D+E AD   + G+N  E HP++  
Sbjct: 119 VIKTNNVDHCARL*HSATVVGLGQAFGSGAMTNSISDIEDADCIFIIGSNTFEQHPLIAR 178

Query: 225 RLSDRRLSSKDCRVHVLSTFENRSFDLADNPMVFHPQSDLVILNYIANYIIQNKAVNTDF 284
           R+   R   K  ++ V+      +   AD  +   P +++ +LN I + +++   V+ +F
Sbjct: 179 RVV--RAKEKGTKIIVIDPRYTPTAKQADLYLQLLPGTNIAVLNAIMHVLVKENLVDEEF 236

Query: 285 VTKHTKFALGVDDIGYGLRPDHPLEKKAKNPGNGKSTPISFDEYAKFVSTYTLEYAAKMS 344
           +   TK                                  ++E    + TYT EYA+K+S
Sbjct: 237 IKNRTK---------------------------------GYEELKTTLETYTPEYASKLS 263

Query: 345 GVEPEKLETLAKAYADPKAKVMSLWTMGINQHVRGVWANNMLYNIHLLTGKIATPGNSPF 404
           GV PE +   AK Y    A  + L+ MGI Q   GV       N+ ++TG I  PG    
Sbjct: 264 GVAPELIVEAAKMYGSANAASI-LYCMGITQFTTGVNNVKSCCNLAMITGNIGKPGTGVN 322

Query: 405 SLTGQPSACGTAREVGTFAHRLPADMVVDNDKHRAITEKMWQVPEGTIPPKPGYHAVLQS 464
            L GQ +  G A ++G   +  P    V      A  EK  +     + P  G    +  
Sbjct: 323 PLRGQNNVQG-ACDMGALPNVFPGYQAVP-----ANHEKYAEAWNTCVDPNVGLS--IPD 374

Query: 465 RMLKDGK-LNCYWTMCTNNMQAGPNINEEMYPGFRNPENFIVVSDPYPTVTAMAADLILP 523
            + K G+ + C + M  N M + P+I+   +       + ++V D + T TA  AD++LP
Sbjct: 375 MLAKAGEQVKCIYVMGENPMVSDPDIHHVEHA--LKSLDLLIVQDIFLTETAQVADVVLP 432

Query: 524 TAMWVEKEGAYGNAERRTHMWHQQVKAPEGAKSDLWQLVEFSKRFKVAEVWPAELIAKKP 583
            A W EK+G + N ERR    ++ V +P  A +D W++V+              ++A+K 
Sbjct: 433 GASWAEKDGTFSNTERRIQKINKAVDSPGEAIAD-WKIVK--------------MLAEKM 477

Query: 584 EYADKTLYEVLFANGVINKFPTTDCKGDLNDESEHFSFYVQKGIFEEYAAFGRGHGHDLA 643
                                          + E F+F   + +F+E A     +     
Sbjct: 478 ------------------------------GQGELFNFNTAEEVFQEIAKVTPQYAG--V 505

Query: 644 EFDRYHETRGLRWPVVNDKETLRRFVEGSDPYVKAGEGYNFYGKPDGKAVIFALPYEPAA 703
            ++R     GL WP    ++          P +   +       PDG   IFA+ Y    
Sbjct: 506 TYERLG-VDGLHWPCKTCEDP-------GTPILHCEKCLT----PDGLGNIFAIDYADPD 553

Query: 704 EEPNSEYDLWMSTGRVLEHWHTGSMTARVPELYRAYPDAQIFMHPEDAKARGLQRGDEVL 763
           E  +SEY + ++TGR++ H+HTG+MT R   +     +  + +HPEDA+  G++   +V 
Sbjct: 554 EMADSEYPMTLTTGRIIFHYHTGTMTRRSKHMADEINEGFVEIHPEDAEKMGIKNKQKVK 613

Query: 764 VASPRGEIKTRVETKGRNKPPRGVVFMPFFDARQLVNKLILDATDPLSKETDFKKCPVKV 823
           V++ RGE+    +     K  +GVVFMPF  A    N L   A DP  K  ++K C  KV
Sbjct: 614 VSTRRGEVVVNAKITPNIK--QGVVFMPFHFAETAANILTNPAQDPNCKIPEYKVCAAKV 671

Query: 824 MK 825
            K
Sbjct: 672 EK 673