Pairwise Alignments

Query, 826 a.a., periplasmic nitrate reductase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 676 a.a., formate dehydrogenase H subunit alpha selenocysteine-containing from Methanococcus maripaludis S2

 Score =  239 bits (609), Expect = 5e-67
 Identities = 213/786 (27%), Positives = 328/786 (41%), Gaps = 126/786 (16%)

Query: 45  CRFCGVGCSVLVGTKAGKVVATKGDPESPVNRGLNCIKGYFLSKIMYGKDRLTTPLLRMK 104
           C +CG GC + +  K GKVV +      PVN G  CIKG +  + ++ +DRLT PL++  
Sbjct: 11  CPYCGTGCGIDLVVKDGKVVDSHPFKRHPVNEGKVCIKGNYCYEFVHSEDRLTKPLIK-- 68

Query: 105 DGKYHKEGEFTPVSWDVAFDTMAAKWKHSIATKGPTSVGMFGSGQWTIWEGYAASKLHKA 164
                K GEF   +WD A D +A K K       P  V  F   + T  E YA  K  + 
Sbjct: 69  -----KNGEFIEATWDEALDLIAGKLKQ----YSPDEVAFFSCARGTNEESYALQKFART 119

Query: 165 GFLTNNIDPNARHCMASAVVGFMRTFGIDEPMGCYDDLEAADHFVLWGANMAEMHPILWA 224
              TNN+D  AR   A  VVG    FG         DL  AD  +++G+N  E HP++ A
Sbjct: 120 VLKTNNVDHCARI*HAPTVVGLGECFGSGAMTNSITDLAQADVLLIYGSNTFEAHPLI-A 178

Query: 225 RLSDRRLSSKDCRVHVLSTFENRSFDLADNPMVFHPQSDLVILNYIANYIIQNKAVNTDF 284
           R S  +      ++  +      +  +AD  +   P S++ ++N I N IIQ    + +F
Sbjct: 179 R-SIVKAKENGTKIIAIDPRTTHTAKMADLHLKLIPGSNIDLINTITNIIIQEGMADEEF 237

Query: 285 VTKHTKFALGVDDIGYGLRPDHPLEKKAKNPGNGKSTPISFDEYAKFVSTYTLEYAAKMS 344
           +   T+                                  +DE    VS YTLE  A++S
Sbjct: 238 IKNRTE---------------------------------GYDELKDVVSKYTLEKTAELS 264

Query: 345 GVEPEKLETLAKAYADPKAKVMSLWTMGINQHVRGVWANNMLYNIHLLTGKIATPGNSPF 404
           G+  E +   A+ Y   +     ++ +G+ ++  GV       N+ ++TG +  PG    
Sbjct: 265 GIPAETILEAARMYGSAE-NASIMYCLGVTEYTFGVDNVKSCCNLAMVTGNLGRPGTGVN 323

Query: 405 SLTGQPSACGTAREVGTFAHRLPADMVVDNDKHRAITEKMWQVPE-----GTIPPKPGYH 459
            L GQ +  G A ++G   +  P    V     R   E +W+  +     G   P+  + 
Sbjct: 324 PLRGQNNVQG-ACDMGALPNVFPGYQKVGEAYER--LENLWETADLNREIGLTSPEVLHK 380

Query: 460 AVLQSRMLKDGKLNCYWTMCTNNMQAGPNINEEMYPGFRNPENFIVVSDPYPTVTAMAAD 519
           A  Q + L          +  + M A  +IN           +F VV D + T TA  AD
Sbjct: 381 AGEQVKFLH--------IVGEDPMVADADINH--VEKALKSLDFFVVQDIFLTETAKLAD 430

Query: 520 LILPTAMWVEKEGAYGNAERRTHMWHQQVKAPEGAKSDLWQLVEFSKRFKVAEVWPAELI 579
           ++LP A W EK+G + N+ERR     + V AP  A  D W +V                +
Sbjct: 431 VVLPAACWAEKDGTFTNSERRVQRIRKAVDAPGDALPD-WLIV--------------RKL 475

Query: 580 AKKPEYADKTLYEVLFANGVINKFPTTDCKGDLNDESEHFSFYVQKGIFEEYAAFGRGHG 639
           A+K    +K                       LN ES    F     +  +YA       
Sbjct: 476 AEKMGAGEK-----------------------LNFESASEIFDEMAKVIPQYAGM----- 507

Query: 640 HDLAEFDRYHETRGLRWPVVNDKETLRRFVEGSDPYVKAGEGYNFYGKPDGKAVIFALPY 699
                F+R     GL+WP    +          DP         F  +P+G      + +
Sbjct: 508 ----SFERL-GIDGLQWPCKTPE----------DPGTPILHKEKFL-RPNGLGKFTPVEH 551

Query: 700 EPAAEEPNSEYDLWMSTGRVLEHWHTGSMTARVPELYRAYPDAQIFMHPEDAKARGLQRG 759
           + A E  + EY L ++TGR++ H+++G+MT R   +     +  I ++ EDAK  G++ G
Sbjct: 552 KDADELIDEEYPLILTTGRIIFHYNSGTMTRRCDSITNEIDENFIEINTEDAKELGIKPG 611

Query: 760 DEVLVASPRGEIKTRVETKGRNKPPRGVVFMPFFDARQLVNKLILDATDPLSKETDFKKC 819
           ++V V+S RG +    + +      +GVV+M F    +  NKL   A DP+SK  + K C
Sbjct: 612 EKVRVSSRRGTV--NADARVTENVIKGVVYMSFHFLEEATNKLTNSAYDPVSKTAELKIC 669

Query: 820 PVKVMK 825
            VKV K
Sbjct: 670 AVKVEK 675