Pairwise Alignments

Query, 244 a.a., iron-sulfur cluster-binding protein NapG (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 52.8 bits (125), Expect = 9e-12
 Identities = 41/155 (26%), Positives = 61/155 (39%), Gaps = 24/155 (15%)

Query: 64  LSACVRCGLCVEACPYDTLT-------LARWFDGAATGTPFFTARHIPCEMCEDIP-CIK 115
           L ACV C +C +ACP++ +        LA                +I  E+C     C  
Sbjct: 191 LDACVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKELCVSCGWCAN 250

Query: 116 ACPSGALDPQLEHISDAKMGIAVLIDEKNCLNFKGLRCDVCYRVCPLIDNAITLERQRNQ 175
            CP+ A++ +     +      ++IDE  C       C  C  VCP   NA+   +   Q
Sbjct: 251 ICPADAIEVEKPFEGE------LIIDEPACN-----ACGACISVCPC--NALVFPQPEKQ 297

Query: 176 HSDHHAMFLPTVNSDTCTGCGKCEHACVLDTAAIK 210
                 +    VN D C  CG C H+C +D   +K
Sbjct: 298 GDKVPNV---VVNQDVCILCGACTHSCPVDALTVK 329



 Score = 47.4 bits (111), Expect = 4e-10
 Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 20/150 (13%)

Query: 62  DFLSACVRCGLCVEACPYDTLTLARWFDGAATGTPFF-------TARHIPCEMCEDIPCI 114
           D    CV CG+C  ACP+D + L+   D   T  P +             C +CE   C 
Sbjct: 66  DISEKCVLCGMCACACPFDAVKLS-INDKPITEMPQYPKIKRGIELNQSKCVLCEQ--CE 122

Query: 115 KACPSGALDPQLEHISDAKMGI--AVLIDEKNCLNFKGLRCDVCYRVCPLIDNAITLERQ 172
             CP  A+D + E + + K  +   + I + +C     + C +C   CP   +AI L   
Sbjct: 123 LVCPQCAIDVERE-VPERKSLVLGEITIKKDDC-----VLCGICAEYCPA--DAIELIPN 174

Query: 173 RNQHSDHHAMFLPTVNSDTCTGCGKCEHAC 202
                  + +    ++ D C  C  CE AC
Sbjct: 175 DMNALSLNPIADIKIDLDACVYCKVCEKAC 204



 Score = 45.1 bits (105), Expect = 2e-09
 Identities = 46/169 (27%), Positives = 68/169 (40%), Gaps = 26/169 (15%)

Query: 67  CVRCGLCVEACPYDTL---TLARWFDGAATGTPFFTARHIPCEMCEDIPCIKACPSGAL- 122
           CV CG+C E CP   +    L   F G         +    C +C    C  ACP  A+ 
Sbjct: 32  CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISE--KCVLCGMCAC--ACPFDAVK 87

Query: 123 -----DPQLEHISDAKMGIAVLIDEKNCLNFKGLRCDVCYRVCPLIDNAITLERQRNQHS 177
                 P  E     K+   + +++  C     + C+ C  VCP    AI +ER+  +  
Sbjct: 88  LSINDKPITEMPQYPKIKRGIELNQSKC-----VLCEQCELVCP--QCAIDVEREVPERK 140

Query: 178 DHHAMFLPTVNSDTCTGCGKCEHACVLDTAAIKVLP---TALALGKSAE 223
               +   T+  D C  CG C   C  D  AI+++P    AL+L   A+
Sbjct: 141 S-LVLGEITIKKDDCVLCGICAEYCPAD--AIELIPNDMNALSLNPIAD 186



 Score = 31.2 bits (69), Expect = 3e-05
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 67  CVRCGLCVEACPYDTLTLAR 86
           C+ CG C  +CP D LT+ R
Sbjct: 311 CILCGACTHSCPVDALTVKR 330



 Score = 25.4 bits (54), Expect = 0.002
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)

Query: 191 TCTGCGKCEHACVLDTAAIKVLP 213
           TC GCG C   C   T+AI++ P
Sbjct: 31  TCVGCGICSEIC--PTSAIEMGP 51