Pairwise Alignments

Query, 319 a.a., iron-sulfur cluster-binding protein napH (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 656 a.a., 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 79.7 bits (195), Expect = 2e-19
 Identities = 75/280 (26%), Positives = 103/280 (36%), Gaps = 71/280 (25%)

Query: 59  SASLLLDTIPFADPLVSLQLLLAGHTPELSLLIGA---GLVTAFYALAGGRVFCSWVCPV 115
           SA+L  D +   DP V+L   +AG        IGA   GLV    +L  GR FC W+CP 
Sbjct: 32  SATLTRDLLVRLDPSVALTASIAGRA-----FIGAAVPGLVVLALSLLLGRAFCGWMCPF 86

Query: 116 NLVTDTASWLRRKLKLPRTSE-----------------LPRNLRYYLLALVLLLPLLTGS 158
             + D   ++ R+L   R                    +PR  +Y +LA +L   L    
Sbjct: 87  GTMVDAGDYVLRRLARGRRKRKSAGGEPGRHDSAPRPTVPRLPKYAVLAAMLAAALAGLD 146

Query: 159 LIWEWVNPVPLVYR------------------------------------AVLFGSLSGL 182
           L++ W  P+PL  R                                     V   S +  
Sbjct: 147 LVF-WAAPLPLAARFWALAAWPPVARLAEGALSLAAPLARQMGATGLAFAEVAVPSYAAT 205

Query: 183 WILAAIFLLDL---FIAERAWCGHLCPTGALFGLVGKWSPIKIVASKASACDNCMDCFAV 239
             +   F+L L    IA R WC  LCP GA  GL G+ +P +       AC  C  C   
Sbjct: 206 GYIVGFFVLVLAGGVIAPRLWCRMLCPAGAAMGLAGRAAPWR--RRVEHACTACGACARR 263

Query: 240 CPERQVLKPALKGQSPVISSPDCTQCGRCIDVCAQRVFRY 279
           CP   +   A +         +C +C RC DVC     R+
Sbjct: 264 CPAGAIPAAAPR----ATDHAECLKCLRCADVCPVDAVRF 299



 Score = 28.5 bits (62), Expect = 5e-04
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 19/80 (23%)

Query: 131 LPRTSELPRNLRYYLLALVLLLPLLTGSLIWEWVNPVPLVYRAVLFGSLSGLWILAAIFL 190
           LP ++ L R+L   L   V L   + G              RA +  ++ GL +LA   L
Sbjct: 29  LPDSATLTRDLLVRLDPSVALTASIAG--------------RAFIGAAVPGLVVLALSLL 74

Query: 191 LDLFIAERAWCGHLCPTGAL 210
           L      RA+CG +CP G +
Sbjct: 75  LG-----RAFCGWMCPFGTM 89



 Score = 28.5 bits (62), Expect = 5e-04
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 11/87 (12%)

Query: 201 CGHLCPTGALFGLVGKWSPIKIVASKA--------SACDNCMDCFAVCPERQVL---KPA 249
           C   CPT A+  L  + +  KI  ++         +    C+ C  VCP   +    +P 
Sbjct: 469 CARACPTTAIRRLADERTFAKIGTAEVLRDHCLAWAKKKRCLVCDEVCPYDAIALKPEPG 528

Query: 250 LKGQSPVISSPDCTQCGRCIDVCAQRV 276
                P +    C  CG C   C + V
Sbjct: 529 YTVGVPHVDPARCAGCGFCEKHCPETV 555