Pairwise Alignments

Query, 243 a.a., conserved hypothetical protein TIGR00046 (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 238 a.a., RNA methyltransferase, RsmE family from Pseudomonas stutzeri RCH2

 Score =  189 bits (481), Expect = 3e-53
 Identities = 106/244 (43%), Positives = 150/244 (61%), Gaps = 10/244 (4%)

Query: 1   MRVPRIYQPQPLAVNQQLNLDEDGAAHIGKVLRMGNGEQISLFNGDGHDYLAEIIDAAKK 60
           MR+ R +   PL++ Q   L E  A +IG+VLR+  G  + LF+G G ++  E+++  KK
Sbjct: 1   MRLSRFFIDAPLSLGQH-PLPEASAHYIGRVLRLTAGSAVQLFDGSGDEFRGELLEVGKK 59

Query: 61  SVTVKVLSCEANPSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLS 120
           +VTV++        ES L +HLGQ +SRG+RM++ IQK+ ELGV  ITP+ S+RC V+L+
Sbjct: 60  TVTVELHEHLKGMPESALQIHLGQGLSRGERMDWAIQKATELGVAQITPIISERCEVRLN 119

Query: 121 GERLDKKIQQWQKIVISACEQSGRSQVPVVRPAMELQQWCSEPTSALKLNLHPRAAHGIN 180
            ER DK++  W++I ISACEQ GRS +P++   + L+ W +   + LKL LHP A     
Sbjct: 120 DERADKRLAHWRQIAISACEQCGRSVLPIIHAPVSLRDWLA-VEAELKLVLHPIAEP--- 175

Query: 181 GLDLSHTRVR---LLIGPEGGLSAEEIAMTETHQFTDVLLGPRVLRTETASLTAITALQL 237
               SH + R    LIGPEGGLS  E+       F    LGPRVLRTETA + A++  Q 
Sbjct: 176 --LASHAKPRTLAFLIGPEGGLSENEVEQAAVQGFLPARLGPRVLRTETAPVVALSVAQQ 233

Query: 238 RFGD 241
            +GD
Sbjct: 234 LWGD 237