Pairwise Alignments

Query, 243 a.a., conserved hypothetical protein TIGR00046 (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 245 a.a., 16S ribosomal RNA methyltransferase RsmE from Sinorhizobium meliloti 1021

 Score = 87.0 bits (214), Expect = 3e-22
 Identities = 62/245 (25%), Positives = 114/245 (46%), Gaps = 12/245 (4%)

Query: 2   RVPRIYQPQPLAVNQQLNLDEDGAAHIGKVLRMGNGEQISLFNGDGHDYLAEIIDAAKKS 61
           R+ R++    L    +     +   ++  VLR+G G  + +FNG   ++ AEI   ++K 
Sbjct: 6   RMQRLFIENALHAGAKHEATREQFNYLINVLRLGEGSSLLVFNGRDGEWRAEIAMPSRKQ 65

Query: 62  VTVKVLSCEANPSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLSG 121
             +  +  +  P  +P +L       +  R+++ +QK+VE+G   + P+ +     K+  
Sbjct: 66  AVLVAVE-QTRPQPAPCDLVYLFAPLKVGRLDYLVQKAVEMGAGVLQPVMTQHVQGKIGS 124

Query: 122 ERLDKKIQQWQKIVISACEQSGRSQVPVVRPAMELQQWCSEPTSALKLNLHPRAAHGING 181
                 +++ +  VI A EQ G   +P V    +L+    +     ++          N 
Sbjct: 125 ------LERVRANVIEAAEQCGVLGIPAVEEPRKLEDLLIDWPRDRRIVFCDEGNDSQNP 178

Query: 182 LDL----SHTRVRLLIGPEGGLSAEEIAMTETHQF-TDVLLGPRVLRTETASLTAITALQ 236
           L +    +  R+ LLIGPEGG S  E  +  +  F T + LGPR+LR +TA++ A+  +Q
Sbjct: 179 LPILEGIAERRLALLIGPEGGFSEAERDLLRSRDFVTAIPLGPRILRADTAAVAAMAVIQ 238

Query: 237 LRFGD 241
              GD
Sbjct: 239 ATLGD 243