Pairwise Alignments

Query, 243 a.a., conserved hypothetical protein TIGR00046 (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 244 a.a., ribosomal RNA small subunit methyltransferase E from Marinobacter adhaerens HP15

 Score =  236 bits (601), Expect = 4e-67
 Identities = 120/244 (49%), Positives = 164/244 (67%), Gaps = 2/244 (0%)

Query: 1   MRVPRIYQPQPLAVNQQLNLDEDGAAHIGKVLRMGNGEQISLFNGDGHDYLAEIIDAAKK 60
           MR+PRIY    LA      LD++ A H+G+VLRM  G+++ LFNGDG+DY A I  A+KK
Sbjct: 1   MRIPRIYTNSALAQGSTAELDDNAAQHVGRVLRMQAGQELLLFNGDGNDYPATISSASKK 60

Query: 61  SVTVKVLSCEANPSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLS 120
           +V V+V + EAN +ESPL + LGQ +S+GDRM++ +QK+VE+GV  I PL ++RC VKL 
Sbjct: 61  NVEVQVGTPEANTTESPLEIVLGQTLSKGDRMDYAVQKAVEMGVTRIVPLTTERCDVKLK 120

Query: 121 GERLDKKIQQWQKIVISACEQSGRSQVPVVRPAMELQQWCSEPTSA-LKLNLHPRAAHGI 179
           G+R DK+++ WQ + ISA EQ GR++VP + P M + +W        ++L LH R  H +
Sbjct: 121 GDREDKRLRHWQSVAISAAEQCGRARVPEILPVMTVSEWLEHSRDCEVRLVLHHRTEHAL 180

Query: 180 NGLDLSHTRVRLLIGPEGGLSAEEIAMTETHQFTDVLLGPRVLRTETASLTAITALQLRF 239
             + +   RV L+IGPEGGLS EEIA  E   F  V LGPRVLRTETA + A+   Q  +
Sbjct: 181 KSI-IPPERVALMIGPEGGLSPEEIAHAEKEGFLPVALGPRVLRTETAPVAAMALCQWLW 239

Query: 240 GDLG 243
           GD+G
Sbjct: 240 GDIG 243