Pairwise Alignments

Query, 563 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 546 a.a., putative polymerase with PALM domain, HD hydrolase domain and Zn ribbon from Dechlorosoma suillum PS

 Score =  189 bits (481), Expect = 2e-52
 Identities = 138/457 (30%), Positives = 228/457 (49%), Gaps = 30/457 (6%)

Query: 51  AIDKVVAQTNTLCNQDKGKFELFAV-LAERRDGSVKIEISPDKMLATMTLTAPCGGKAVD 109
           A+ +  A    L +  KG   + A+ +AE  D   ++ ++ DKM A +++T P GG  +D
Sbjct: 48  ALRRNAAALGVLADSIKGARPVAALAVAEAVDAKAEVSVAGDKMAAFLSITPPQGGAPID 107

Query: 110 LPEILTELKKNNVCMGLSKLKIQTLLQKMTKLKPGNSCKNEIAQGKHAINGQNAVLERKV 169
              I   L +  V  G+ +  I   L        G +    IA+G+  ++G++  +E  V
Sbjct: 108 DAAIRRALAQQGVTTGIRESAIAQALAL------GQADNLLIAEGRAPVHGEDGRIEVLV 161

Query: 170 SLARERLLQPQEREDGTVDMRNLGSMIMVKPNDILMIKHPATEGSPGYNIKGEVIKQKPG 229
             +R R+  PQ  E G +D RNLG ++ V     +M + PAT G+PG  + G VI    G
Sbjct: 162 PESRSRV--PQVNEKGLMDYRNLGEILTVHAGQAVMQRIPATPGTPGETVSGAVIPALAG 219

Query: 230 KDL---PLQAGTGADFHPKDPNKLIATVAGQPVETRTGVNVDDVLQVKDVDISTGHVTFK 286
           K+    P  +G   D  P DPNKL A + GQPV TR GV V+    V +V I++G++ F 
Sbjct: 220 KETMFSPNLSGVAPD--PADPNKLAAAITGQPVRTREGVIVEPTYTVNEVTINSGNIDFD 277

Query: 287 GSILITGDVHEGMIVKSAGDITVMGFVDSATLEAEGDITVSKGVIG----RQIRVNEFST 342
           G++ + GDV  GM ++++GDI + G V++A + A GDI +  G IG    +  + NE  +
Sbjct: 278 GAVTVKGDVQAGMTIRASGDIEIGGTVEAAVIVAGGDIVIKGGAIGAGGRKDAQGNEIPS 337

Query: 343 NLTAQGQISAQFVQYSQLTAKGNILITKQLLHSNTKTAGTLTVSDTSGRRGDLIGGIAHA 402
            +   G  +A +VQ +++ A  +I I    + SN      + V     +RG +IGG A A
Sbjct: 338 YIQCGGSFTATYVQQAKVEAGDSIFIDDVAMQSNLIAINQIVVGHK--QRGHIIGGRAQA 395

Query: 403 EKGLIAVAIGATAGTKTEVFCAM------EQGELKQNLKHIEESVQAMVLATLDIEARLK 456
              + A  IG+ A   T +   +      +Q  L  + + +EE + A V+  L++ A+L 
Sbjct: 396 TLLVKAKVIGSGAHIGTRIDIGLDPKLRAQQQRLVLHRQQVEEQL-AQVVKLLELAAKLP 454

Query: 457 KLPPKSEWQNDPVMIEQI---KIMLDEKNRILNERIR 490
           +  P    +   +  E +      L E+  +L E++R
Sbjct: 455 ERVPPETLKRARITRESLLRTLTRLGEEETLLQEQLR 491