Pairwise Alignments

Query, 563 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 378 a.a., conserved hypothetical protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 73.6 bits (179), Expect = 1e-17
 Identities = 94/371 (25%), Positives = 142/371 (38%), Gaps = 50/371 (13%)

Query: 185 GTVDMRNLGSMIMVKPNDILMIKHPATEGSPGYNIKGEVIKQKPGKDLPLQAGTGADFHP 244
           G VD  NLG +  V    +L    P  +       +  + ++       L  G      P
Sbjct: 27  GKVDHYNLGYVQNVVKGQVLAEFIPIDDTDDPVIDRNHIFEEPL-----LPVGPNCKVDP 81

Query: 245 KDPNKLIATVAGQPVETRTGVNVDDVLQVK-DVDISTGHVTFKGSILITGDVHEGMIVKS 303
             P +++A   G        + V  +L V+ DVD  TG++ F   I + GDV  G  V+ 
Sbjct: 82  DSPLRVVADANGYVFYNDGLITVKRMLNVRRDVDFHTGNIFFVSDIAVHGDVRAGFEVQG 141

Query: 304 AGDITVMGFVDSATLEAEGDITVSKGVIGRQIRVNEFSTNLTAQGQISAQFVQYSQLTAK 363
             +I V G ++ AT+ A G + V  G  G     +  S  L A   +   F +  +L A 
Sbjct: 142 -NNILVKGIIEGATVRARGSLAVEGGARG-----SGGSGLLDAGDTLRVPFAESMELRAH 195

Query: 364 GNILITKQLLHSNTKTAGTLTVSDTSGRRGDLIGGIAHAEKGLIAVA--IGATAGTKT-- 419
           GNILI K  LHS    A  L V      +  L GG  H   GL+ V   +G   GT T  
Sbjct: 196 GNILIEKFCLHSLVYAATNLVV------KNRLQGGTVHC-NGLVYVETHLGNPKGTPTAT 248

Query: 420 ------EVFCAMEQGELKQNLKHIEESVQ--AMVLATLDIEARLKKLPPKSEWQNDPVMI 471
                 + F   +   L+Q+++ +++S+   A +   L  ++   K              
Sbjct: 249 RINMGYDPFTMRKLDRLEQHIRELQDSLTHIAGIAGNLGSDSAPGK-------------- 294

Query: 472 EQIKIMLDEKNRILNERIREELEFDGLKQEVESYFDKYHIDVIKHVFLNVEFHIGQANHR 531
                 LD   + LN  IR+         E E+      + V   V+  VE  IG+A   
Sbjct: 295 -----RLDNARKKLNRLIRQREALWAALTEDEARAALCRVVVPGTVYPGVEISIGKAFFE 349

Query: 532 TTREHGTCSIS 542
              E    S S
Sbjct: 350 VEHEMNNVSFS 360