Pairwise Alignments

Query, 653 a.a., TonB-dependent receptor C-terminal domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 706 a.a., TonB-dependent siderophore receptor from Pantoea sp. MT58

 Score =  117 bits (294), Expect = 1e-30
 Identities = 170/713 (23%), Positives = 285/713 (39%), Gaps = 121/713 (16%)

Query: 4   HPTKIALLIGSLCSFSIIAPVMAADD-TSTAKVD-------EHLVVIGRSDKTPLNIAAN 55
           HP  +  + GS+    + A   +A D T TA              V  +     L+   +
Sbjct: 12  HPALVMAIFGSIMLPQVSAATDSAPDMTVTADASPEGNYSASETSVASKMPTARLDEVQS 71

Query: 56  VNVIDAAAIEMSGATNLTDVLRGQSGIQISDNNIGTS--FAMRGFSASTAVNNTLILLDG 113
           V+V+    +E   A++L D +R  SG+  ++   GT   F  RGF ++    +  I  DG
Sbjct: 72  VSVVTQQQLEDFQASSLADAMRFVSGVSEANTLAGTEDGFVRRGFGSNA---DGSIYRDG 128

Query: 114 RRLN---NIDIAAPSLNAIPLNLVERVEILSGSAGVLYGDQAVGGVINIVTKSPE-NTGG 169
            R +   N D              ERVE+L GS+ +LYG Q  GGVIN+V+K P+ N   
Sbjct: 129 IRSSQGLNFDATT-----------ERVEVLKGSSSLLYGIQNPGGVINVVSKKPQYNWHS 177

Query: 170 SVQLSGGSFNTYEGRGDVSGAINKDWRYFLSGSYNQGDNYRQHNANETGSILGRIQYKTA 229
           SV     S     G  DV+G +   + + L       D +R   + E   +   +Q+   
Sbjct: 178 SVTGRYASEGGGAGTVDVTGPLGNGFAFRLIAEKQNQDYWRNFGSEEHTLLAPSLQWFGE 237

Query: 230 TDSFFVE-TSYYDDDRENPGSLTVDQFKFD---PRQSSNKSEYVHEMTTAARSGYQHQLN 285
             SF +    Y  D   + G+  +D    D     +  +K+ +         + Y  Q N
Sbjct: 238 QASFLISYADYRYDIPYDRGTAFIDGKPIDIGYKDRLDDKANHAWGHNRTLNAHYDWQFN 297

Query: 286 QNWALAADL-------DYSDTLVSSVNWGAG------------SHNTRSL---LMFSPKA 323
             W     L       D ++  V++VN  +G            +H T+ +   LM +P+ 
Sbjct: 298 DEWRTRLTLGWNQRQYDNNEVRVTAVNATSGVVTRRADANRGFNHKTKYVSWDLMGNPEI 357

Query: 324 L----ANYSTRQGELNLVTGLDISRGKA---------DYDSM------------ARSNVQ 358
           L    A  +    E+N        +GK          DYD +            A +N+ 
Sbjct: 358 LGMQHALVAGTDYEMNQTYRAHQYQGKVNRQFNYFNPDYDMLSPVTDASTENTAAANNLN 417

Query: 359 DMQSAYLQATVPLSHTLSYVV--GGRYARVTDELVDGNVYPNGIDLDEDATAF--EFGLN 414
            + S  L A   +S T  ++V  GGRY    ++       P    L+++   F  + G+ 
Sbjct: 418 RIHSRSLYAKDSISLTQDWIVVLGGRYQHY-EQRASRGFNPQIETLNDEGNKFLPQAGVI 476

Query: 415 YRPSAEHRFYLRGDENFR-FAKVDEQAYTPKDVFGLKPQTGRSYEAGWDWTVASQSL-RV 472
           Y+ + +  FY    ++F     VD++          KP+ G S+E G  W ++ + L  V
Sbjct: 477 YKLTPDLSFYTSVSKSFTPSTDVDDEGNVG------KPEQGTSWEVGSKWQLSPKLLATV 530

Query: 473 SLYRLDLEDEIVFDPSAEKPVGGSFQGANVNADASRRYGASADWDWQVTQALQLGLEYNY 532
           +LYR+D           E+ +  +  G+    D +R  GA  + + ++     L   Y+Y
Sbjct: 531 ALYRID-----------ERSMSLNINGSTRAIDKARSTGAEFELNGEIAPGWDLSANYSY 579

Query: 533 IDAEFTDGL----NDGKKLSWVAEHSGRGYVSMD-----VAEHIQLFAEAIYTGERFVEG 583
             AE         N+G +L     H+G  Y+S +     +   ++L   A Y G R  + 
Sbjct: 580 DQAEIVSDRVNPDNNGNRLQNAPRHAGALYLSHEMQVSGLPGSLRLGGGARYVGSRAGDP 639

Query: 584 DNANQGEKLASYVLGNLALNYSR----DAWLASLRIDNLFDKDYVSSGYYGGN 632
           DN+     L  YV+ +  + +      +     L I+NLF++ Y +S   GGN
Sbjct: 640 DNS---FTLPDYVVADSFVAWKNRLFGEKTELRLNINNLFNQHYYTSS--GGN 687