Pairwise Alignments

Query, 653 a.a., TonB-dependent receptor C-terminal domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 780 a.a., TonB-dependent receptor from Herbaspirillum seropedicae SmR1

 Score =  100 bits (248), Expect = 3e-25
 Identities = 124/567 (21%), Positives = 225/567 (39%), Gaps = 77/567 (13%)

Query: 20  IIAPVMAADDTSTAKVDEHLVVIGRSDKTPLNIAANVNVIDAAAIEMSGATNLTDVLRGQ 79
           +I+    AD   T  V E      R+D        +V+VI+AA I+   A  L+DVLR  
Sbjct: 122 LISVAATADSGGTGFVAESSATFSRTDTPLSETPKSVSVINAAVIQSQSAQTLSDVLRNA 181

Query: 80  SGIQISDNNIGT-SFAMRGFSASTAVNNTLILLDGRRLNNIDIAAPSLNAIPLNLVERVE 138
           SG+       G  SFA+RG+     V N  ++ DG  L++   AA      P   +  VE
Sbjct: 182 SGVVARPGPYGVPSFAIRGY-----VGNAPVMSDG--LSSYGSAASPAALTPTIAIAGVE 234

Query: 139 ILSGSAGVLYGDQAVGGVINIVTKSPE-NTGGSVQLSGGSFNTYEGRGDVSGAINKDWRY 197
           ++ G + ++  D   GGV+N++ K+P+      VQ++ GS +  +   D +GAI++D R 
Sbjct: 235 VVKGPSAIMAADAPPGGVVNVIKKAPQVEPFHEVQVAYGSNSFSQVAFDSTGAIDEDKRL 294

Query: 198 ---FLSGSYNQGDNYRQHNANETGSILGRIQYKTATDSFFVETSYYDDDRENPGSLTVDQ 254
              F+  +    +N+  ++      I   +Q+K  +    +  + +   RE     TV  
Sbjct: 295 RYRFVVSADKSSENFMGYDGGRHFYIAPTLQWKDRSTDLTLGYA-HTVTREPFPQYTVGY 353

Query: 255 FK------FDPRQSSNKSEYVHEMTTAARSGYQHQLNQNWALAADLDYSDTLVSSVNWGA 308
            +      +      N+ ++         +  + +L+ N    +   Y+ T      W A
Sbjct: 354 ARGGYVDGYVEHPLGNRGDHFSMTADELTAKLEQKLSDNLTFVSKNGYTSTTQGQDGWAA 413

Query: 309 GS--HNTRSLLMFSPKALANYSTRQGELNLVTGLDISRGKA----------------DYD 350
            S   N+ +L +   K+ ANY T   +  L    D++  K+                D +
Sbjct: 414 ASTVTNSNALTLLGFKSSANYYTANSQNYLRLKSDLAGVKSTTLVGVDYSYMHYVQYDRN 473

Query: 351 SMARSNVQDMQSAYLQATVPLSHTLSYVVGGRYARVTDELVDGNVYPN------------ 398
           S + + + D+      A  P+S  L+Y  GG+  RV   L +  +Y N            
Sbjct: 474 SSSTTTIPDIFGTINVA--PISSPLTYQFGGQTQRVGSYLQEQLIYSNLTVLASIRRDSY 531

Query: 399 -----------GIDLDEDATAFEFGLNYRPSAEHRFYLRGDENFRFAKVDEQAYTPKDVF 447
                         + + A +   GL Y+ + E   Y+  ++ F+   V     T     
Sbjct: 532 LSSTNIVGRAPSGGMHQTAYSPSLGLMYQLTPEIAPYVNWNKGFQPNNV-----TAYGGG 586

Query: 448 GLKPQTGRSYEAGWDWTVASQSLRV--SLYRLDLEDEIVFDPSAEKPVGGSFQGANVNAD 505
            L P+    +EAG  + +    L +  +LY +D  ++ + DP          +G  ++  
Sbjct: 587 LLAPKQSEQFEAGVKFNLMDDKLELTTALYHIDYTNQSISDP--------VHRGFYISTG 638

Query: 506 ASRRYGASADWDWQVTQALQLGLEYNY 532
            +   G   +   Q+   L +  +Y Y
Sbjct: 639 GAVSQGLEVELKGQIMPGLNVIAQYAY 665