Pairwise Alignments

Query, 303 a.a., ribokinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 299 a.a., Ribokinase (EC 2.7.1.15) (from data) from Herbaspirillum seropedicae SmR1

 Score =  218 bits (554), Expect = 2e-61
 Identities = 129/299 (43%), Positives = 175/299 (58%), Gaps = 4/299 (1%)

Query: 4   ILVIGSANADHVMNFEYLPVPGQTLKSRSYRLEHGGKGANQAVACARLCLPDSRVDFICH 63
           I++IGS N D V+    +P+PG+TL    +    GGKGANQAVACARL  P +RV  +  
Sbjct: 2   IVIIGSVNMDLVLRVPRMPLPGETLAGDRFMTIPGGKGANQAVACARLAAPGTRVAMVAC 61

Query: 64  LGQDSIGNEMRDSWLKDGIQAEGITLVDNVSTGTAMIFVADNGENAIGIAAGANAHLTPL 123
           +G D+ G +MR S    GI    I  V   +TG A I V  N +N+I IAAGAN  L   
Sbjct: 62  VGDDAFGGQMRQSITACGIDDRYIDEVAGEATGIASIMVDANAQNSIVIAAGANGRLDVE 121

Query: 124 ELEKHYALFANAQYLLIQLETPTETVSNALQMAKRLGITTVLNPAPAATQELDYLKWVDI 183
            +E+  AL   A  +L+QLE P  TV +++++A  LG T VLNPAPA       L+ +D 
Sbjct: 122 RIERARALIEQASIVLLQLEVPMATVIHSIELAHALGKTVVLNPAPAQALPRALLQKIDY 181

Query: 184 ITPNETEAEALTGIEVKHEEDAKLAAQWLHQQGITTVVITLGSKGAFIS-SPGFTGLIPA 242
           +  NE EA  L     +  ED  + A+ LH  G   VV+TLG KG + S + G    +PA
Sbjct: 182 LILNEIEAAMLA---EEQSEDIPMLARKLHDLGARNVVVTLGEKGVYGSFADGQQRHLPA 238

Query: 243 LTVQAIDTVAAGDTFNGALVVGLSEGMSIAAAVSFANAASAITVTREGAQRAIPYRSEV 301
             VQA+DT AAGDTF G  +  +++G     A+++A AA+A++VTR GAQ +IP R EV
Sbjct: 239 RKVQAVDTTAAGDTFIGGFIGAIAQGRDQFEAIAYAQAAAALSVTRVGAQTSIPTRDEV 297