Pairwise Alignments

Query, 303 a.a., ribokinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 319 a.a., ribokinase from Herbaspirillum seropedicae SmR1

 Score =  193 bits (490), Expect = 5e-54
 Identities = 117/299 (39%), Positives = 167/299 (55%), Gaps = 6/299 (2%)

Query: 4   ILVIGSANADHVMNFEYLPVPGQTLKSRSYRLEHGGKGANQAVACARLCLPDSRVDFICH 63
           + V+G   AD       +P  GQT+    + +  GGKG+NQAVA AR+  P   V FI  
Sbjct: 10  VAVLGIYVADLAFRAPNMPGLGQTIAGTGFAMGPGGKGSNQAVAAARVGAP---VRFISA 66

Query: 64  LGQDSIGNEMRDSWLKDGIQAEGITLVDNVSTGTAMIFVAD-NGENAIGIAAGANAHLTP 122
           +G+D+ G+     W ++ I A  + ++D   TG A I+V D +G+NAI +  GA + L+ 
Sbjct: 67  IGKDAFGDFALSLWRRETI-APHVRVIDGAPTGAAFIYVNDASGDNAIIVVPGAASQLSE 125

Query: 123 LELEKHYALFANAQYLLIQLETPTETVSNALQMAKRLGITTVLNPAPAATQELDYLKWVD 182
            ++E+       A+  + QLE P E     LQ+A+  G TTV NPAPA           D
Sbjct: 126 QDVERERQAIEAAKVFVTQLEQPPEAALAGLQIARAAGTTTVFNPAPALAFPAQVYGLCD 185

Query: 183 IITPNETEAEALTGIEVKHEEDAKLAAQWLHQQGITTVVITLGSKGAFISSPGFTGLIPA 242
            ITPNE EA  LTGIE+ H +DA+ AA  L ++G+   +ITLG++G+ + S   +  +PA
Sbjct: 186 FITPNEHEAALLTGIEIHHIDDARRAADVLLERGVGCALITLGAQGSLLHSRSQSLHLPA 245

Query: 243 LTV-QAIDTVAAGDTFNGALVVGLSEGMSIAAAVSFANAASAITVTREGAQRAIPYRSE 300
           L     ++T  AGD FNGA   GL+EGMS   A   A A +AI+VTR G   ++P R E
Sbjct: 246 LCAGTVVETAGAGDAFNGAFAAGLAEGMSAEEAARLATAVAAISVTRPGTAPSMPSRQE 304