Pairwise Alignments

Query, 962 a.a., glycine cleavage system P protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 950 a.a., Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) from Pseudomonas fluorescens FW300-N2E3

 Score = 1138 bits (2943), Expect = 0.0
 Identities = 568/959 (59%), Positives = 716/959 (74%), Gaps = 13/959 (1%)

Query: 5   TLTQLEQHDLFLRRHIGPDSSQQQEMLNYVGAESLDDLTAQIVPESIRLSQELSIGDSCG 64
           T   L   + F+ RHIGP +  +Q MLN +G +SL+ L+A ++P+SI+ +  L + D   
Sbjct: 2   TQVNLSTANEFIARHIGPRAGDEQAMLNSLGFDSLEALSASVIPDSIKGTSVLGLEDGLS 61

Query: 65  EAEGIAYIRGLAKQNQVFKSYIGMGYYGTQVPNVILRNVLENPGWYTAYTPYQPEIAQGR 124
           EAE +A I+ +A +NQ+FK+YIG GYY    P+ ILRN+LENP WYTAYTPYQPEI+QGR
Sbjct: 62  EAEALASIKAIAAKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGR 121

Query: 125 LEAILNFQQVSMDLTGLDLASASLLDEATAAAEAMALAKRVSKAKKANIFFVADDVFPQT 184
           LEA+LNFQ +  DLTGL +A+ASLLDEATAAAEAM   KR+SK K ++ FF +    PQT
Sbjct: 122 LEALLNFQTLISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHAFFASIHSHPQT 181

Query: 185 LDVVKTRAECFGFEVVVGPASEAVN-HELFGALFQYSNRFGQITDFTDLFAELRAKNVIV 243
           LDV++TRAE  G +VVVG   E  +    FGAL QY    G + D+ +L     A N +V
Sbjct: 182 LDVLRTRAEPLGIDVVVGDERELTDVSAFFGALLQYPASNGDLFDYRELTERFHAVNALV 241

Query: 244 TVAADIMSLVLLKSPGSMGADVVFGSAQRFGVPMGFGGPHAAFFVARDEHKRSMPGRIIG 303
            VAAD+++L +L  PG  GADV  GSAQRFGVP+GFGGPHAA+F  +D  KR MPGR++G
Sbjct: 242 AVAADLLALTVLTPPGEFGADVAIGSAQRFGVPLGFGGPHAAYFSTKDAFKRDMPGRLVG 301

Query: 304 VSKDTRGNRALRMAMQTREQHIRREKANSNICTAQILLANMASFYAVFHGPQGLKTIASR 363
           VS D  G  ALR+AMQTREQHIRREKA SNICTAQ+LLAN+AS YAV+HGP+GLK IA+R
Sbjct: 302 VSVDRFGKPALRLAMQTREQHIRREKATSNICTAQVLLANIASMYAVYHGPKGLKQIANR 361

Query: 364 INRFADILAAGLQAKGVSLVNNTWFDTISIK-GLDVAAVNARALAAEMNLRFDADGIVGV 422
           I+    ILA GL A G+++    +FDT+++  G + AA++ +A A  +NLR      +G+
Sbjct: 362 IHHLTAILAKGLSALGLNVEQANFFDTLTLATGANTAALHDKARAQRINLRVIDGERLGL 421

Query: 423 SLDETTIRTDIDALFEVILGAGHGLDVAALDAQIVAQGSQSIPASLVREDAILSHPTFNR 482
           SLDETT + DI+ L+ V+       D AAL A + ++    IPA LVR+  ILSHP FNR
Sbjct: 422 SLDETTTQADIETLWSVLADGKALPDFAALAASVQSR----IPAELVRQSPILSHPVFNR 477

Query: 483 YQSETEMMRYIKRLESKDLALNYSMISLGSCTMKLNAAVEMIPVSWPEFANMHPFCPLDQ 542
           Y SETE+MRY+++L  KDLAL+ +MI LGSCTMKLNAA EMIPV+W EF  +HPF P  Q
Sbjct: 478 YHSETELMRYLRKLADKDLALDRTMIPLGSCTMKLNAASEMIPVTWAEFGALHPFAPPAQ 537

Query: 543 AKGYTQLIEELSSWLVNVTGYDAVCIQPNSGAQGEYAGLLAIRKYHESRGEAHRNICLIP 602
           + GY QL +EL + L   TGYDA+ +QPN+G+QGEYAGLLAIR YH+SRGE  R+ICLIP
Sbjct: 538 SAGYQQLTDELEAMLCAATGYDAISLQPNAGSQGEYAGLLAIRAYHQSRGEERRDICLIP 597

Query: 603 QSAHGTNPASAQLAGMQVVVTACDKQGNVDLEDLKAKAAEVAENLSCIMITYPSTHGVYE 662
            SAHGTNPA+A +AGM+VVVTACD +GNVD+EDL+AKA E  E+L+ +MITYPSTHGV+E
Sbjct: 598 SSAHGTNPATANMAGMRVVVTACDARGNVDIEDLRAKAIEHREHLAALMITYPSTHGVFE 657

Query: 663 ETVREICNIVHQHGGQVYLDGANMNAQVGLTSPGFIGADVSHLNLHKTFAIPHGGGGPGM 722
           E +REIC I+H +GGQVY+DGANMNA VGL +PG  G DVSHLNLHKTF IPHGGGGPG+
Sbjct: 658 EGIREICGIIHDNGGQVYIDGANMNAMVGLCAPGKFGGDVSHLNLHKTFCIPHGGGGPGV 717

Query: 723 GPIGVKAHLAPFVAGHVVVKPGRESDNNGAVSAAPYGSAGILPISWMYIKLLGSKGLKKS 782
           GPIGVK+HL PF+ GH  ++        GAV AAP+GSA ILPI+WMYI+++G  GLK++
Sbjct: 718 GPIGVKSHLTPFLPGHAAME-----RKEGAVCAAPFGSASILPITWMYIRMMGGAGLKRA 772

Query: 783 TQTALLNANYVMKKLSEHYPVLFRGRNDRVAHECIIDLRPIKEASGVTEMDIAKRLNDYG 842
           +Q A+LNANY+ ++L EHYPVL+ G N  VAHECI+DLRP+K++SG++  D+AKRL D+G
Sbjct: 773 SQLAILNANYISRRLEEHYPVLYTGSNGLVAHECILDLRPLKDSSGISVDDVAKRLIDFG 832

Query: 843 FHAPTMSFPVAGTLMIEPTESESKVELDRFIDAMVSIRAEIAKVEAGEWPADNNPLHNAP 902
           FHAPTMSFPVAGTLMIEPTESESK ELDRF DAM+ IR EI  VE G    D+NPL NAP
Sbjct: 833 FHAPTMSFPVAGTLMIEPTESESKEELDRFCDAMICIREEIRAVENGTLDKDDNPLKNAP 892

Query: 903 HTMADIMDSAFDSRPYSREVAVFPSAAVRTNKFWPTVNRIDDVYGDRNLFCACVPLSDY 961
           HT A+I+     + PYSRE AV+P A++   K+WP V R+D+V+GDRNL CAC  +  Y
Sbjct: 893 HTAAEIVGEW--THPYSREQAVYPVASLIEGKYWPPVGRVDNVFGDRNLICACPSIESY 949