Pairwise Alignments

Query, 273 a.a., transcriptional regulator, AraC/XylS family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 275 a.a., AraC/XylS family transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  174 bits (442), Expect = 1e-48
 Identities = 108/275 (39%), Positives = 156/275 (56%), Gaps = 16/275 (5%)

Query: 5   EHINYWRHPNLSGIELSQAEFTHFSFDKHVHLDYHLGVVTQGAQQFINKGSRYQLGQHGL 64
           E I++ +  +L+G ELS+A +  F F +HVH D HLG V +GAQ F +KG+ + L +  L
Sbjct: 4   EIIDFRQSQSLAGAELSRASYQRFDFGRHVHEDLHLGAVIRGAQAFNHKGTGHTLCRGDL 63

Query: 65  STLNPDETHDGQSRDAEGYRVKVMSIPVDFMNAISQEMGQATHFFNAPMIDDSALYQYFI 124
           STL+PDE HDG +    GY V V+S+P   ++  + E+G +   F  P   D ALYQ F+
Sbjct: 64  STLSPDECHDGIAATDTGYEVLVLSLPQWHLDRFAAELGISFGGFCQPKRKDMALYQAFV 123

Query: 125 QLHNLLTQEQCTELAAESHLLNFMQLLLTR-------HPAGTLKLGQDQGLSLQQLNLIK 177
            LH LL Q +   L  E+ LL+F Q LL +          GT+K G       +++ L K
Sbjct: 124 SLHRLLYQAE-NPLLEETALLDFFQRLLGQCSKSEKVTNTGTVKAGLS-----REIRLAK 177

Query: 178 QKIHDEPWQNTQLEGLANEVNLSKFQFLRQFKQATGMTPHAYLKRVRLELAKKSL--THG 235
             + D P +   LE L +   L +++ LR F+  TG++PH +  R+RLE AKKSL    G
Sbjct: 178 SLMADTP-EPVTLELLGDATGLGRYRLLRHFRAQTGLSPHQWQLRLRLERAKKSLMQNDG 236

Query: 236 TLVVDVAQQLGFFDQSHLNKAFKQAFLLSPVQFQR 270
             + D+A Q GF D SH  + F+ AFL SP  ++R
Sbjct: 237 NSLTDIAHQHGFSDLSHFTRHFRMAFLTSPSAYRR 271