Pairwise Alignments

Query, 273 a.a., transcriptional regulator, AraC/XylS family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 355 a.a., transcriptional regulator, AraC family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  102 bits (254), Expect = 1e-26
 Identities = 76/281 (27%), Positives = 126/281 (44%), Gaps = 15/281 (5%)

Query: 3   PVEHINYWRHPNLSGIELSQAEFTHFSFDKHVHLDYHLGVVTQGAQQFINKGSRYQLGQH 62
           P E +++     L G++L +A +T   F +H H  Y LGV+  GA +F   G  +     
Sbjct: 21  PKEDVSWMAASRLPGLDLLRARYTRQVFARHFHEGYALGVIEGGALRFRYLGRDHVAVSG 80

Query: 63  GLSTLNPDETHDGQSRDAEGYRVKVMSIPVDFMNAISQEMGQ---ATHFFNAPMIDDSAL 119
            ++ + P ETHDG      G+  ++  +  D +    +E G    A   F + ++DD  L
Sbjct: 81  AVNLVAPGETHDGHGVGDAGWAYRMFYLDPDIVRMAGEEAGLPHGALPDFASGVLDDPEL 140

Query: 120 YQYFIQLHNLLTQEQ--CTELAAESHLLNFMQLLLTRHPAGT------LKLGQDQGLSLQ 171
                 LH  + +       LA E+ L   +   +TRH A        L+ G +     +
Sbjct: 141 AAAIDALHRDMERAGPCMPTLAQETRLSAVLARWITRHAAQRAPAALPLRTGGEPAAVRR 200

Query: 172 QLNLIKQKIHDEPWQNTQLEGLANEVNLSKFQFLRQFKQATGMTPHAYLKRVRLELAKKS 231
             + +     D+     +L  LA    LS F   R F  A  + PHAYL + R+  A++ 
Sbjct: 201 ARDYLDAHCADD----VRLADLAGVACLSPFHLARAFAAAVRLPPHAYLVQARVRRARQL 256

Query: 232 LTHGTLVVDVAQQLGFFDQSHLNKAFKQAFLLSPVQFQRRM 272
           L+ G    + A   GF DQSHL +AF+    ++P +F++ +
Sbjct: 257 LSAGATPAEAAAAAGFADQSHLTRAFRAQVGVTPARFRKML 297