Pairwise Alignments

Query, 273 a.a., transcriptional regulator, AraC/XylS family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 278 a.a., AraC family transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  139 bits (349), Expect = 9e-38
 Identities = 90/270 (33%), Positives = 137/270 (50%), Gaps = 8/270 (2%)

Query: 5   EHINYWRHPNLSGIELSQAEFTHFSFDKHVHLDYHLGVVTQGAQQFINKGSRYQLGQHGL 64
           EH  Y     L G+EL  A +   +F +H H  Y +GV+  GAQ+F   G  +   +H +
Sbjct: 4   EHAAYHIANELGGLELLNAHYHKQNFSRHTHEGYTVGVIETGAQRFYRTGGNHVAPKHSI 63

Query: 65  STLNPDETHDGQSRDAEGYRVKVM-SIPVDFMNAISQEMG--QATHFFNAPMIDDSALYQ 121
             +N DE H+G S   +G+  + M  +P  F N I+QE    +   +F  P++ D  L +
Sbjct: 64  ILVNADEVHNGCSATEDGWSYRAMYPVPAQFAN-ITQEFTSTRGAPYFPQPVVQDPELAE 122

Query: 122 YFIQLHNLLTQEQCTELAAESHLLNFMQLLLTRHPAGTLKLGQDQGLSLQQ-LNLIKQKI 180
                 + L       L  ES + + +  L+ RH  G     +  G + +  L L+K  I
Sbjct: 123 LLRLTFSTLDTSD-NRLLRESLVYSSLTQLMARH--GRNYPCEHLGANAKPALALVKSFI 179

Query: 181 HDEPWQNTQLEGLANEVNLSKFQFLRQFKQATGMTPHAYLKRVRLELAKKSLTHGTLVVD 240
            D P  +  LE LA    LS +  LRQF++  G+ PHAY  + R+ LAK+ +  G  ++D
Sbjct: 180 DDHPAADISLEELATLAGLSPYYLLRQFQRCYGLPPHAYQTQARVRLAKQKIGQGIKLLD 239

Query: 241 VAQQLGFFDQSHLNKAFKQAFLLSPVQFQR 270
           VA + GF DQSHLN+ FK+   L+P QF +
Sbjct: 240 VAMECGFHDQSHLNRHFKKTVGLTPGQFAK 269