Pairwise Alignments

Query, 596 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 582 a.a., lipid A ABC transporter ATP-binding protein/permease MsbA from Pantoea sp. MT58

 Score =  296 bits (758), Expect = 2e-84
 Identities = 195/593 (32%), Positives = 314/593 (52%), Gaps = 35/593 (5%)

Query: 12  DKLNWHVIKLLWPYLLEYKGRVALAMSCLIVAKLASVGLPFILKDVVDTLDANKTAQTLS 71
           D   W   + LWP +   K  +  A   LI+       +  +LK ++D  D    A   S
Sbjct: 6   DLSTWQTFRRLWPMIAPNKAGLIAASVALIINAAGDALMLSLLKPLLD--DGFGKADR-S 62

Query: 72  VPIGLVLAYGAVRLLTVITGEIRDTLFGRVTERAIRRLGLAVFDHLHRLDLDFHLERRTG 131
           V + L L    + L+  +T  I       V+   +  +   +F H+  + + F  ++ TG
Sbjct: 63  VMLWLPLVVIGLMLVRGVTSYISSYCISWVSGNVVMNIRRRLFSHMMGMPVSFFDQQSTG 122

Query: 132 GL-------SRDIERGTSGVSFLMRFMVFNIVPTLLEIAMVIGIFFFNYGVAFASITFIS 184
            L       S  +   +SG           +V  + E A +IG+F   +  ++     + 
Sbjct: 123 TLLSRITYDSEQVASSSSGA----------LVTVVREGASIIGLFVMMFYYSWQLSLILI 172

Query: 185 VLAYIWFSVIATEWRTEYVRDAAKADSLSNTR------AIDSLLNYETVKYFNNEKYESE 238
           VLA     +++   RT   R    + S+ NT       A   L  ++ V  F  ++ ESE
Sbjct: 173 VLA----PIVSFAIRTVSKRFRTISKSMQNTMGQVTTSAEQMLKGHKEVLIFGGQEIESE 228

Query: 239 RYDQALDQWEVAKRKNRLSLFALNGGQALIIAIAMTAMMALAAYKVTHNEMTLGDFVLIN 298
           R+ +  ++      K   +    +    LI ++A+  ++  A++    + +T G   ++ 
Sbjct: 229 RFSRVSNRMRQQGMKLVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVF 288

Query: 299 AFMMQLFMPLNFLGFVYREIRGALANIERMFSLLDKHPSIVDKPDALDFEPKRGELSFEN 358
           + M+ L  PL  L  V  + +  +A  + +FS+LD    + +     +    +G++ F +
Sbjct: 289 SSMIALMRPLKSLTNVNAQFQRGMAACQTLFSILDSEQEVDN--GTREMTRAKGDIEFRD 346

Query: 359 VSFSYDDR--PILRNVSFKVAAGKKVAVVGDSGAGKSTLIKLLFRFYDVEQGRILIDGQD 416
           V+F+Y  R  P LRN++  + AGK VA+VG SG+GKST+  LL RFYD++QG IL+DG D
Sbjct: 347 VTFTYPGRDIPALRNINLSLPAGKTVALVGRSGSGKSTMASLLTRFYDIQQGEILLDGHD 406

Query: 417 IRQLTQDALRRAIAIVPQDTVLFNDSLVENIRYGRPNA-SDDDVRHAIKLAHLEDFIASL 475
           +R+ +  +LR  +A+V Q+  LFND++  NI Y R    S  ++  A  +AH  DFI  +
Sbjct: 407 LREYSLRSLRNQVALVSQNVHLFNDTIANNIAYARSEQYSRAEIEQAATMAHAMDFINKM 466

Query: 476 SQGWDTKVGERGLKLSGGEKQRVAIARAILKGSPVLVFDEATSSLDSRSEQAILSALREV 535
            +G DT +GE G+ LSGG++QR+AIARA+L+  P+L+ DEATS+LD+ SE+AI SAL E+
Sbjct: 467 DKGLDTVIGENGVLLSGGQRQRIAIARALLRDCPILILDEATSALDTESERAIQSALDEL 526

Query: 536 AKGHTSLVVAHRLSTIVDADQIVVLSKGEIVEQGNHSSLLAQDGLYAKLWRIQ 588
            K  TSLV+AHRLSTI  AD+IVV+  G+IVE+G H  LLA+ G YA+L ++Q
Sbjct: 527 QKNRTSLVIAHRLSTIEKADEIVVIEDGQIVERGTHQVLLAERGAYAQLHKMQ 579