Pairwise Alignments

Query, 544 a.a., iron(III) ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 603 a.a., spermidine/putrescine ABC transporter permease from Herbaspirillum seropedicae SmR1

 Score = 91.3 bits (225), Expect = 1e-22
 Identities = 133/528 (25%), Positives = 227/528 (42%), Gaps = 77/528 (14%)

Query: 59  LWVSIGSLLLALPC----AWLMARCEFVGRRYLQWALLLPLAMPAYIVAYVYTDLLDYAG 114
           L ++ G  L+A+P     A+LM R +  GR ++  AL++P+ +   ++ + Y   +   G
Sbjct: 82  LTLATGLALIAVPLGGMLAFLMVRTDLPGRSFIAPALMVPIFVSPMVIGFGYVVSM---G 138

Query: 115 PVQ------RSLRALFGWSSP--QDYFFPDIRTLGGAACVLSLVLFPYIYLLARTAFMEQ 166
           PV       ++L ++FG+       Y F  I  + G   V      P++YL A  A    
Sbjct: 139 PVGFYTVWVKNLLSVFGFEGDPWNIYSFTSIVIIAGLTHV------PHVYLYASAALRSL 192

Query: 167 SLNLAHASRIMGCSPWQSFWRLSLPMARPALAVGVALVAMETAADFATVNYFAVP----T 222
             ++  A+R+ G SP Q    +SLPM  PALA    LV       F  V     P     
Sbjct: 193 GSDVEEAARVAGASPLQVALNVSLPMIMPALAYSGVLVFFLGFEVFGLVLVLGDPEGHLV 252

Query: 223 LTTAVY--DTWLGYGNLTAAAKLSAIILLVVFSLIGVERFARRKQQLF----QKQSRIQA 276
           L T +Y     LG  +    A ++  ++ V   L+ ++R+  R    +     K +R +A
Sbjct: 253 LPTYLYKLTNKLGTPSYHLMAAVAVCLVAVTMPLVMLQRWLLRSANKYVAIKGKGARQKA 312

Query: 277 IDLYRLSPMQTLLGLGYCGMLLLLAFVLP-SGILLSYAINYFEQS--------------- 320
           + L +   +  +L  G+    LL   ++P SGI L   ++++                  
Sbjct: 313 LPLGKWRWVAFVLIAGW----LLFTVIIPLSGIGLRTFVSHWGDGVSLLEVLTFENLLNV 368

Query: 321 WD-PLFWQLSVNSLTLALI--TSLVCCVIALVLMFIRR---------VSPRSSDALPSRL 368
           WD P   +  +N++ + +I     V C  A+ L   R+          S     A+P  L
Sbjct: 369 WDQPSLVRGIINTVLIGVIGGALAVACYTAIALAMHRKQDGVTRFLDYSVLVPRAVPGLL 428

Query: 369 ASTGYALPGTVLAIGVLVPLTLLDFAI----NDIADWL-GMAGPGLLLTGSTVALVF-AF 422
           A   +      L + + VP +LLD A+    N IA WL     P L    ST+  V+ A+
Sbjct: 429 AGLSF------LWVFLFVP-SLLDSALKGIDNPIALWLVDSFIPALRGLRSTIFSVWLAY 481

Query: 423 CVRFVAIAIGSVESSYKRISPSLDMVSLTLGQSPRRLLQRVHLPLLTKGLFAGALLVFIE 482
            V ++A  +  + ++  ++ P L+  +  +G S  R+ + V LPL+  GL    L+VF+ 
Sbjct: 482 SVVWMAYGLRLINTALLQVGPELEEAARAVGASRSRVTRDVTLPLVRYGLVGAWLMVFLI 541

Query: 483 SMKELPAALLLRPIGFENLATYVFQFVSDEKLE-HGALPAIVIVLVGL 529
             +E    + L   G E + + +    +   +E   AL  I I LV +
Sbjct: 542 FEREYSTGVYLLSPGTEVIGSMIVSMWAAGAVELVAALSFINITLVAV 589