Pairwise Alignments

Query, 728 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 768 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

 Score =  335 bits (859), Expect = 5e-96
 Identities = 202/555 (36%), Positives = 314/555 (56%), Gaps = 13/555 (2%)

Query: 171 RIAHDMLAS-ENKYREVFNQLPLACALLDKQNQLMMLNKIALQTL----PVQHGYDLFSM 225
           +I  D L   E   R  ++Q P+    LD++N +  +N  A Q L     V  G+ +   
Sbjct: 205 KITEDKLFQREASLRHYYDQQPVMMLTLDERNHIQQVNHFAEQLLGYPADVMLGHHIRDF 264

Query: 226 VREEEHAMLTDTLHMVREGVLGQAWCELPLKSQHHLD---WLRLSFSQIYGDKDTLVMIA 282
            ++EE  +LT    ++       +     +  +HH     W+R +   +  +  TL+++ 
Sbjct: 265 YQDEE--VLTPRQMLLLPSRHASSVWRREVCYRHHSGETVWVRENIRPLV-ETGTLLIVG 321

Query: 283 EDVSEKYRLADELSFHANYDALTGLPNRLHFEALLENLLHAKDDM--PTCVAFIDVDQFQ 340
           ED++E  +LAD+L++ A YD LT   NR  FE  L   L   D       + ++D+DQ +
Sbjct: 322 EDITETRQLADQLAYQARYDLLTHTLNRNQFELELAKALKETDSQLRTHAMLYLDLDQLK 381

Query: 341 VINNISGHQAGDKLLCQLALRLKQLVRKGDIVARLGGDEFGILMHYCNVDSAQHIAKRIC 400
           V+N+ +GH AGD  +   A  L+ ++     +AR+GGDEF +L+  C    A  +A+ I 
Sbjct: 382 VLNDTAGHDAGDGAIQFCASMLEDVLPFKATLARMGGDEFSVLLRDCTERDAVLVAQSII 441

Query: 401 TQLATHEFIWENRCHNVSVSMGIAKFNRSASDIYAVMSHADAACRLAKDKGRNGWHLYST 460
             L+   F+WE+   N++ S+GI   + +A+    V + AD AC  AK++GRN ++LY  
Sbjct: 442 HALSEVAFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLYRQ 501

Query: 461 KDPKMTRLYTEMMASVDIVSALALNQFELYFQSIAPLNYDESGLHLEVLLRMVQPNGNIV 520
            D  + R   EM +   +  ALA  + EL+ Q I PLN  +  LH EVL+R+    G  V
Sbjct: 502 DDEDLRRRQLEMESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLVRIKNAAGEYV 561

Query: 521 SPAIFLPAAERYNLAAKIDLWVIDNLLKWGSNHLAIWQQLGLVSVNLSATSLGDSEFMNW 580
           SP IF+PA+ERYNLA ++D  +++    W      +  +LG VS+NLS  S+G+ +F+ +
Sbjct: 562 SPGIFVPASERYNLAHRLDRKIVEQTFNWLEARPQVLDKLGRVSINLSGNSIGNPDFVAF 621

Query: 581 LEMRLMTEPELVDKLCIEITETAAVSQLDQATKLIEVLRPLNCQLALDDFGAGFSSFAYL 640
           L  RL        K+C EITETAA+  L+QA K++  L+ L C LALDDFG+G SSF YL
Sbjct: 622 LLERLRDSRIPCSKVCFEITETAAMRNLNQAIKVLSQLKSLGCVLALDDFGSGLSSFGYL 681

Query: 641 KRLNVDYVKIDGQFVINLCEDGADQAIVKAICQLGQDMGFDVVAEFVESTEIGLKLKSLG 700
           ++L VD VKIDG FV ++ ++  D+ +V++I +L + MG   VAEFVE+ +I   L+ +G
Sbjct: 682 QKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQQILEALQQIG 741

Query: 701 VDYAQGYAINKPTPL 715
           VDYAQGY  ++P P+
Sbjct: 742 VDYAQGYLFSRPQPI 756