Pairwise Alignments

Query, 231 a.a., ubiquinol-cytochrome c reductase, cytochrome c1 (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 254 a.a., cytochrome C from Herbaspirillum seropedicae SmR1

 Score =  199 bits (506), Expect = 4e-56
 Identities = 106/250 (42%), Positives = 150/250 (60%), Gaps = 23/250 (9%)

Query: 3   KLLIALVTLLPTLAIAAGGQVHLEDANVDLHDKASLERGLGLFQHYCSGCHSTQYQRYER 62
           K +IA + LLP LA A+ G   L+ A     D +SL+ G  LF +YC  CHS    RY R
Sbjct: 5   KKVIAALALLPALACASEGTFPLDHAPDRTKDVSSLQNGAKLFVNYCLNCHSASSMRYNR 64

Query: 63  VANDLGISADDMRNKYMFTDAKIGELMQNAIPPKDAAKWFGATPPDLTLVARVR------ 116
           +  D+G++ D ++N  MF+  K+G+LM+ ++ P+DA  WFGA PPDL+++AR +      
Sbjct: 65  L-RDIGLTEDQIKNNLMFSGEKVGDLMKISLSPQDAKAWFGAAPPDLSVIARAKASEAGS 123

Query: 117 GEDWVYSYLKGFYKDPSRPFGVNNTVFPSVGMPHVLEELQGTP----VKQED-------- 164
           G DW+Y+YL+ +Y D SRP G NN +FP+VGMPHVL ELQG      V+++D        
Sbjct: 124 GPDWIYTYLRSYYTDDSRPTGWNNMLFPNVGMPHVLWELQGIRKAKFVEEKDPHDASKTI 183

Query: 165 ----GTIVVSGGKLNAEEYDQAVRDITGFLVYSAEPVKLERQALGWWVLGFLFIFFIVAY 220
               G   V  GK+   EYD  V D+  +L + AEP +  R+ LG WVL FL IF ++A+
Sbjct: 184 HKFAGFEQVKPGKMTTAEYDNNVADLVAYLQWMAEPAQNTRKRLGVWVLLFLGIFAVLAW 243

Query: 221 LLKKEYWKDV 230
            L   YWK++
Sbjct: 244 RLNASYWKNI 253