Pairwise Alignments

Query, 968 a.a., RNA polymerase-associated protein HepA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

 Score = 56.2 bits (134), Expect = 4e-12
 Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 495 LIEFLKSHRSKKVLIIASGADTALSLEEALRTREGIQATVFHEGMSIIERDKAGAYFAQE 554
           L+  LK H+  +VL+     + A SL + L  + GI ATV H   S  ER+ A A F  +
Sbjct: 249 LVALLKQHQWPQVLVFIGAKENADSLTKKLN-KAGIVATVLHGDKSQSEREAALAEF--K 305

Query: 555 EGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRLDRIGQ 603
            G  Q LI +++ + G + +    ++ F+LP++ +    R+GR  R GQ
Sbjct: 306 NGTTQVLIATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQ 354



 Score = 25.4 bits (54), Expect = 0.008
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 179 GLGKTIEAGLIIHQQLLTCRAERVLIIVP 207
           G GKT+  GL + ++L T   ++ L++VP
Sbjct: 69  GSGKTLAYGLPLLERLKTSPEQQALVLVP 97