Pairwise Alignments

Query, 324 a.a., sensory box/GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 643 a.a., diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  140 bits (354), Expect = 7e-38
 Identities = 77/180 (42%), Positives = 110/180 (61%), Gaps = 3/180 (1%)

Query: 145 LKAANEQLERLSQTDGLTQLHNRRHWQQCLEHEYDLYARYSGIASLVMIDIDHFKNINDT 204
           L+AAN +L RLS TD LTQL NRR + + L+ E     R     S+++ DIDHFK +ND 
Sbjct: 453 LEAANAELTRLSTTDALTQLANRRRFDRLLDEEIRRARRSGSPLSVLLADIDHFKRVNDG 512

Query: 205 YGHLAGDKVIQHIAHIL-SHSLRETDCAGRYGGEEFAVVMPSTCGADALNFTERLREKIA 263
           YGH  GD+ ++ +A +L +H  R  D A RYGGEEF V++P++    A    ER+R+ I 
Sbjct: 513 YGHPFGDECLRQVAAVLAAHCQRAGDLAARYGGEEFVVLLPASDQRQAFVLAERIRQNIE 572

Query: 264 SSTVVYEGLKIKVTVSLGVCELGKHISSSSSWISCSDKALYEAKQKGRNCTVLHCAPTSA 323
              + Y    + +T+SLGV  LG  ++S+ + ++ +D ALY AK  GRN  V  CAP +A
Sbjct: 573 RLQLRYGDQAVALTISLGVATLGPTVASAEALLATADAALYAAKHAGRNQVV--CAPEAA 630