Pairwise Alignments

Query, 324 a.a., sensory box/GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 362 a.a., diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  130 bits (327), Expect = 5e-35
 Identities = 74/214 (34%), Positives = 118/214 (55%), Gaps = 13/214 (6%)

Query: 99  YRPITGRADFMYQNVTLLPLASLTGKITHISVIVYDVTDIAVNKLQLKAANEQLERLSQT 158
           + P T +   MY  + +L +  LT     I +++Y +        QL      L  LS+T
Sbjct: 142 FSPYTSQLQ-MYACLPMLVVHPLT-----IGMVLYRLAS------QLGENKRALRSLSRT 189

Query: 159 DGLTQLHNRRHWQQCLEHEYDLYARYSGIASLVMIDIDHFKNINDTYGHLAGDKVIQHIA 218
           D LT L NR +W + L+ E+       G+ASL +ID+D+FK +ND +GH+ GD++++ + 
Sbjct: 190 DSLTGLFNRGYWNELLQLEFAHCRATRGVASLALIDLDNFKLVNDRHGHVIGDELLRQVG 249

Query: 219 HILSHSLRETDCAGRYGGEEFAVVMPSTCGADALNFTERLREKIASSTVVYEGLKIKVTV 278
             +  +LR  D  GRYGG+EF VV+P     DA    ERLR +IA+       + +  ++
Sbjct: 250 QCIRRNLRAEDMPGRYGGDEFCVVLPGARAQDAWEVLERLRTEIAALDFPLAPM-LSASL 308

Query: 279 SLGVCELGKHISSSSSWISCSDKALYEAKQKGRN 312
           S+G+ E    +S   +W+  +D ALY+AK+ GRN
Sbjct: 309 SIGIAECDPRMSDVLAWVHAADSALYDAKRLGRN 342