Pairwise Alignments

Query, 324 a.a., sensory box/GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 492 a.a., Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain (NCBI) from Rhodospirillum rubrum S1H

 Score =  129 bits (325), Expect = 1e-34
 Identities = 73/209 (34%), Positives = 116/209 (55%), Gaps = 9/209 (4%)

Query: 104 GRADFMYQNVTLLPLASLTGKITHISVIVYDVTDIAVNKLQLKAANEQLERLSQTDGLTQ 163
           GRA  M  N  +L  A+  G+   +  ++ D+T+        K   E L RL+ TD LT 
Sbjct: 288 GRARTMIYNKAVLTDAA--GQAVGLVAVITDITE-------QKRMEEALRRLATTDPLTG 338

Query: 164 LHNRRHWQQCLEHEYDLYARYSGIASLVMIDIDHFKNINDTYGHLAGDKVIQHIAHILSH 223
             NRR + +    +  L  R+    ++ + DIDHFK +ND +GH  GD+ ++     +  
Sbjct: 339 ALNRRAFMEAARRDLALAQRHGEPVTVALADIDHFKRVNDQHGHATGDEALKTFVATVHG 398

Query: 224 SLRETDCAGRYGGEEFAVVMPSTCGADALNFTERLREKIASSTVVYEGLKIKVTVSLGVC 283
           +LR +D  GR GGEEFA+++P T  A A+   +RLR+ +A+  V     +++ TVS+G+ 
Sbjct: 399 ALRASDVLGRMGGEEFALILPHTALASAMLLADRLRQTLANLRVPCPSGEVEFTVSIGLA 458

Query: 284 ELGKHISSSSSWISCSDKALYEAKQKGRN 312
           ELG H ++  + +  +D+ALY AK  GRN
Sbjct: 459 ELGTHGTTIDTLLQAADEALYRAKSAGRN 487