Pairwise Alignments

Query, 717 a.a., sensory box histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 986 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  130 bits (328), Expect = 2e-34
 Identities = 92/375 (24%), Positives = 181/375 (48%), Gaps = 28/375 (7%)

Query: 346 ESMLTAELIANEKRFRLIIEASPSALFMVDKTGVITLVNTQGERLFGYTREELLGRSINM 405
           +++  AE++  E+   ++++    A+ ++D  G+I   N   E++FGY+  E+LG++++M
Sbjct: 621 QALAKAEMLERERYLSMLLDNVIDAIIIIDARGIIETFNHAAEQMFGYSSAEVLGQNLSM 680

Query: 406 LLPETLREIHQQHLSHYLVHPIAKNMSMRDDLLGCCKDGTPLAVEVGLTPVHFSNGIYIL 465
           L+PE  R  H  +L HY     ++ +    +L    ++G    +E+ ++ +        +
Sbjct: 681 LMPEPDRSAHDGYLDHYTQRGTSRALEQNRELTALRRNGDTFTIELRVSQISHHGERKFI 740

Query: 466 TTINNISERKRIEAQRIEHMAELERINQELDRFAYIASHDLKSPLRGIEQLTTWLSEDLV 525
             + +I+ERKRIE  + E ++              I SH+L++PL  I      +    +
Sbjct: 741 GLVRDITERKRIERMKSELVS--------------IVSHELRTPLTSISGALGLIVGGAL 786

Query: 526 DNTNENVQKYLGLIQNRIQRMVRLLDGLLTFSRIGRVDNEM-VEVDSRQLVEDMFALVAP 584
              + ++++ L +      R+ RL+D LL   ++  V  +M + + +  L   +   V  
Sbjct: 787 GEPSPSMRQMLDIAHQNSLRLGRLVDDLLDMDKL--VAGKMALALRAHSLQVQLQLAVGA 844

Query: 585 PQGFEL-------VLEGDFPHFKTVKTLLELVVRNLISNAIKHHDRGFGVLKVLCETKNT 637
            QG+         +L             L+ V+ NLISNA+K   +  G +++  E +  
Sbjct: 845 NQGYAAQHRVQLELLPTPSLQLMADDDRLQQVLANLISNAVKFSPQD-GTVRLGGERRGD 903

Query: 638 YYWFSVVDDGPGISSEFQLKVFEMFQTLRPRD--EVEGSGLGLSLVKKTVDSLGGKIQLE 695
           +    V D GPGI+ EF+ ++F+ F      D  +  G+GLGL++ K+ ++ + G+I  +
Sbjct: 904 WVRIWVRDQGPGIAPEFRARIFQKFSQADSSDTRQKGGTGLGLAISKELIEHMHGRIGFD 963

Query: 696 S-VGRGCCFRFSWPI 709
           S  G G CF    P+
Sbjct: 964 SEPGHGACFWCELPL 978