Pairwise Alignments

Query, 717 a.a., sensory box histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1353 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  137 bits (344), Expect = 5e-36
 Identities = 129/495 (26%), Positives = 231/495 (46%), Gaps = 52/495 (10%)

Query: 24  SWL---MLVAALTFMGISWFVLQEYLRERGEERFNNNVQELSEAVS----RRMTAYEQVL 76
           +WL   M V  L  + +S F+     R   + R    ++E  E +      R+  YE  L
Sbjct: 7   TWLVGWMAVVLLAGLSVS-FIASHEQRRSIDARIGQALKEAGEGIGDNLQARLRVYEYRL 65

Query: 77  RG--GVGLFLSSRGVTRSEWQTYVANARLSDYYPGIQGLGFAELVTPATLDEFTQQVQQE 134
           RG  G    L  + +  S+   Y     +   YPG +G GF   V  +   EF ++V+++
Sbjct: 66  RGLRGAVHMLDLQHINSSQMGRYSKGRNIEKEYPGARGFGFIRRVAASDEAEFVRRVRED 125

Query: 135 GFSDFRITPI-------GDRELYCVIKYLEPFDWRNQRAFGFDMCSEATRRSAILKAITS 187
           G  DF ++ +       GDR    +I++++P D RN +A G D+ SE  RR A L+A+ S
Sbjct: 126 GRPDFSLSRLSGPGTRQGDR---FIIQFIDPLD-RNVQALGLDITSEEHRRDAALQAMRS 181

Query: 188 GLPKVSGKVTLVQETPENTQAGVLMYVPLYRGQ--PMTEVERMQQAIGVVYALFRMNDLM 245
           G   +S  +TL+Q+  ++ +A  L  +P+Y     P    +R    IG  YA   M ++M
Sbjct: 182 GAATLSAPITLLQDNDDHMRA-FLFLLPVYSTPEIPTDIAQRETSLIGWTYAPLAMREVM 240

Query: 246 QGI--MGKRFSGIKLAIYDGSEANRTHLMFSSDPKLPSSKDVFYQSQLE-TMEGQVWRID 302
             +  +  R   + L +YD +E  +   +    P+    ++V      E  + G+VWR++
Sbjct: 241 SNLDPLNHR---LHLKLYDVNEGRQ---LIYQTPENDHDQEVLQTYAFEREIYGRVWRME 294

Query: 303 VSSESRFISRAEQTRSVWLQVIG--CAFILALFYAVISMARNRYQESMLTAELIANEKRF 360
           V +   FI+  +   +  + +IG   + +L +    + ++R R Q      +++A + R 
Sbjct: 295 VGAHPAFIAALDPVPAGRVFIIGTLVSLMLTVLVGTLLLSRQRKQ------QVVAGQARL 348

Query: 361 RLIIEASPSALFMVDKTGVITLVNTQGERLFGYTREELLGRSINMLL--PETLREIHQQH 418
             I+E S  A+      G I   N   E++FGY   E+LGR +  LL  PE + E  Q  
Sbjct: 349 ATIVENSSDAIIGEALDGRIITWNRAAEQMFGYDEHEVLGRPLAPLLVPPELVHEDEQ-- 406

Query: 419 LSHYLVHPIAK-NMSMRDDLLGCCKDGTPLAVEVGLTPVHFSNGIYI--LTTINNISERK 475
               L+  +A+       +     K+G  + V +  + +  ++G  +     +++I++RK
Sbjct: 407 ----LLERVARGERGPTLETRRLHKNGQLIDVTITCSFIRETDGTLLGAAKMMHDITDRK 462

Query: 476 RIEAQRIEHMAELER 490
           R+E   +E  A+LE+
Sbjct: 463 RVERYLMEFNAQLEQ 477



 Score = 68.2 bits (165), Expect = 3e-15
 Identities = 97/402 (24%), Positives = 170/402 (42%), Gaps = 35/402 (8%)

Query: 340 ARNRYQESMLTAELIANEKRFRLIIEASPS-ALFMVDKTGVITLVNTQGERLFGYTREEL 398
           A+   Q S  TAEL       + +++AS   ++   D  G I + N   E L GY+  E+
Sbjct: 473 AQLEQQVSERTAELSRVAGLLQGVLDASSEVSIIATDTQGQIFVFNRGAELLLGYSNSEM 532

Query: 399 L-GRSINML-LPETLREIHQQHLSHY---------LVHPIAKNMSMRDDLLGCCKDGTPL 447
           L G    +  LPE +     +    Y           +  ++  S         KDGT +
Sbjct: 533 LSGNGPGVFHLPEEVAARSAELSREYGTLIEGIDVFCYKASREGSETRQWTYVRKDGTTV 592

Query: 448 AVEVGLTPVHFSNGIYI--LTTINNISERKRIEAQRIEHMAELERINQELDRFAYIASHD 505
            V + +TP+  ++G  I  L    +I+ER    A+     +  E  N     F    SH+
Sbjct: 593 PVLMIITPIRTADGELIGHLGIAQDITERLHHSAELHAAKSSAEAANAAKSLFLANMSHE 652

Query: 506 LKSPLRGIEQLTTWLSEDLVDNT--NENVQKYLGLIQNRIQRMVRLLDGLLTFSRI--GR 561
           +++P+  +  ++      L+ NT  N+  ++ L  +Q   + ++ +++ +L  ++I  G 
Sbjct: 653 IRTPMNAVIGIS-----HLLHNTALNDQQRQLLTKLQIAGRTLLGIINDILDIAKIEAGE 707

Query: 562 VDNEMVEVDSRQLVEDMFALVAPPQG-----FELVLEGDFPHFKTVKTL-LELVVRNLIS 615
           +  E      RQL++++  L  P        F + +    P       L +  ++ NL+ 
Sbjct: 708 MRLEHNPFSPRQLLDELGELFTPQAQEKGLRFSVNVVASLPGQLIGDALRVNQILMNLVG 767

Query: 616 NAIKHHDRGFGVLKVLCETKNT---YYWFSVVDDGPGISSEFQLKVFEMFQTLRPRD--E 670
           NA+K    G   + V  E  +       FSV D G GI  +   ++F  F          
Sbjct: 768 NALKFTSVGGVDVTVSREDDHADTCCLRFSVQDTGCGIPGDVLGQLFSPFTQADASTTRR 827

Query: 671 VEGSGLGLSLVKKTVDSLGGKIQLES-VGRGCCFRFSWPIHI 711
             G+GLGLS+V+   + +GG+I +ES +G G  F    P  I
Sbjct: 828 FGGTGLGLSVVRGLAEQMGGRIGVESELGTGSEFWVELPFQI 869