Pairwise Alignments

Query, 717 a.a., sensory box histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1560 a.a., Multi-sensor Hybrid Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H

 Score =  161 bits (407), Expect = 3e-43
 Identities = 145/516 (28%), Positives = 244/516 (47%), Gaps = 33/516 (6%)

Query: 25  WLMLVAALTFMGIS----WFVLQEYLRERGEERFNNNVQELSEAVSRRMTAYEQVLRGGV 80
           W ++ A L  +G+S    W+V Q    E  E   +  +  LS+A++ R+T Y+  LRG  
Sbjct: 14  WWIVGAVLAGIGLSGFAVWWVTQRNA-ELAETAASLELTRLSDAIAERITLYQYGLRGAR 72

Query: 81  GLFLS--SRGVTRSEWQTYVANARLSDYYPGIQGLGFAELVTPATLDEFTQQVQQEGFSD 138
           G+ ++   RG+TR  ++ Y     +   +PG +G GF   V     + F  + + +G+ D
Sbjct: 73  GVIVTFGERGITREVFRGYSKTRDIGAEFPGARGFGFIRRVPADREERFLAEARADGWPD 132

Query: 139 FRITPIGDRE-LYCVIKYLEPFDWRNQRAFGFDMCSEATRRSAILKAITSGLPKVSGKVT 197
           F I      E    VI+Y+EP   RN +A G D+ SE  RR A L AI +G  +++G +T
Sbjct: 133 FAIAQFTPHEGERFVIQYIEPAQ-RNLKAVGLDIASEKNRREAALAAIDTGQVRLTGPIT 191

Query: 198 LVQETPENTQAGVLMYVPLYR--GQPMTEVERMQQAIGVVYALFRMNDLMQGIMGKRFSG 255
           LVQ + + +Q+  L+ +P+YR    P T  ER  QA G  YA   M +++ G++  +   
Sbjct: 192 LVQASGDKSQS-FLILLPIYRTLSTPETLAERRAQAFGWSYAPLNMPEVLSGLVPNQ-DR 249

Query: 256 IKLAIYDGSEANRTHLMFSSDPKLPSSKDVFYQSQLETMEGQVWRIDVSSESRFISRAEQ 315
           + L + D +       +F+S+    +++ V  ++   ++ G+VW I V+    +   A Q
Sbjct: 250 LALTLRDVTNPAEAETVFTSNTDCAAAECV-TKTLTRSIFGRVWEISVTVSPAY-GHAVQ 307

Query: 316 TRSVWLQV---IGCAFILALFYAVISMARNRYQESMLTAELIANEKRFRLIIEASPSALF 372
             + W+ V   IG + + A F AVI + + R +      E+   + R   I+E S  A+ 
Sbjct: 308 RIAPWVVVSLGIGASILAAGFAAVIGLNQARRR------EIAQAQARLSTIVENSGDAII 361

Query: 373 MVDKTGVITLVNTQGERLFGYTREELLGRSINMLLPETLREIHQQHLSHYLVHPIAKNMS 432
                G I   N   E LFGY   E++G+++  LL    R    Q +   ++  ++    
Sbjct: 362 GEALDGTIVGWNRAAEALFGYKAPEVIGKALAPLLIPADRMAENQSI---VLSALSGEAV 418

Query: 433 MRDDLLGCCKDGTPLAVEVGLTPVHFSNG--IYILTTINNISERKRIEAQRIEHMAELER 490
           M  D      DG    V +   PVH   G  + +   I +I +RK  E   +E  A+LE+
Sbjct: 419 MAFDTQRIHADGHLFDVSMTACPVHDRLGHVVGVANLIRDIRKRKAAEQSLLEFNAQLEK 478

Query: 491 INQELDRFAYI--ASHDLKSPLRGIEQLTTWLSEDL 524
             Q   R A +  A   L++ L  +  +  +   DL
Sbjct: 479 --QVASRTAELEKARRALQTVLDSVPSMIGYWDRDL 512



 Score = 74.7 bits (182), Expect = 3e-17
 Identities = 92/390 (23%), Positives = 166/390 (42%), Gaps = 39/390 (10%)

Query: 343  RYQESMLTAELIANEKRFRLIIEASPSALFMVDKTGVITLVNTQGERLFGYTREELLGRS 402
            R + + L   ++A+ + F +I           D  GVIT+ N+  E+L GY+ EE++G+ 
Sbjct: 740  RNRSNTLLRSVLASAREFSIIA---------TDPDGVITIFNSGAEKLLGYSAEEMVGKQ 790

Query: 403  INML--LPETLREIHQQHLSHY---------LVHPIAKNMSMRDDLLGCCKDGTPLAVEV 451
               L  L + + E  +     +          VH   ++     +     KDG  L V +
Sbjct: 791  TPALIHLADQVAERGRSLSDEFGVPIEGFRVFVHRSERDGVEAQEWTYVRKDGGHLEVLL 850

Query: 452  GLTPVHFSNG--IYILTTINNISERKRIEAQRIEHMAELERINQELDRFAYIASHDLKSP 509
             +T +   +G     L    ++S RK  E   +      E  +    +F    SH++++P
Sbjct: 851  VVTAIREDDGRIAGYLGVAQDVSRRKEFERALVLAKQAAEEASVVKGQFLANMSHEIRTP 910

Query: 510  LRGIEQLTTWLSEDLVDNTNENVQKYLGLIQNRIQRMVRLLDGLLTFSRI--GRVDNEMV 567
            +  I  + T +    +     +   Y+    +    ++ LL+ +L FS+I  G++  E  
Sbjct: 911  MNAILGMLTLVQRTAL---TPHQADYVCKAHSAAGSLLGLLNDILDFSKIEAGKLHLEPH 967

Query: 568  EVDSRQLVEDMFALVAPPQGFE--LVLEGDFPH----FKTVKTLLELVVRNLISNAIKHH 621
                  ++ D+  +++   G +   VL    PH    F      L  V+ NL  NA+K  
Sbjct: 968  PFRLETVLRDLAVVLSGSYGDKGVEVLFDIAPHLPDSFIGDDLRLRQVLLNLAGNALKFT 1027

Query: 622  DRGFGVLKV---LCETKNTYYWFSVVDDGPGISSEFQLKVFEMFQTLRPRD--EVEGSGL 676
            D+G  ++ V     E        +V D G GI+++    +F  F+           GSGL
Sbjct: 1028 DQGQVIVSVGVLAREDDRLTMRMAVSDTGIGIAADQLASIFGAFEQAETSTTRRFGGSGL 1087

Query: 677  GLSLVKKTVDSLGGKIQLES-VGRGCCFRF 705
            GL++ +  V+ +GG +++ES  GRG  F F
Sbjct: 1088 GLTITRHLVERMGGVLRVESQPGRGSRFWF 1117



 Score = 42.7 bits (99), Expect = 1e-07
 Identities = 51/200 (25%), Positives = 87/200 (43%), Gaps = 14/200 (7%)

Query: 333 FYAVISMARNRYQ-ESMLTAELIANEKRFRLIIEASPSALFMVDKTGVITLVNTQGERLF 391
           FYA++       +    L A L  NE   R I E    ++   D+ G I  +N    +L 
Sbjct: 595 FYALVHDVSELVEGRQKLDAALRENEALLRTIDEQLLCSI--TDRNGNIISINDNFCKLM 652

Query: 392 GYTREELLGRSINMLLPETLREIHQQHLSHYLVHPIAKNMSMRDDLLGCCKDGTPLAVEV 451
           GYT++ELLG    ++       +H +     +   I+   S R ++    KDG    ++ 
Sbjct: 653 GYTKDELLGLDHRIM----NSGLHDKTFWADVWATISAGGSWRGEVCNKAKDGALYWLDS 708

Query: 452 GLTPVHFSNGI---YILTTINNISERKRIEAQRIEHMAELERINQELDRFAYIASHD--- 505
            LTP    +G    Y+   I +I++RK+ EA+R      L  +      F+ IA+     
Sbjct: 709 VLTPFFGEDGSIDRYVALRI-DITDRKKAEAERNRSNTLLRSVLASAREFSIIATDPDGV 767

Query: 506 LKSPLRGIEQLTTWLSEDLV 525
           +     G E+L  + +E++V
Sbjct: 768 ITIFNSGAEKLLGYSAEEMV 787