Pairwise Alignments

Query, 478 a.a., metallo-beta-lactamase family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 517 a.a., Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain from Pseudomonas stutzeri RCH2

 Score =  211 bits (538), Expect = 4e-59
 Identities = 168/525 (32%), Positives = 252/525 (48%), Gaps = 92/525 (17%)

Query: 7   GAAREVTGSCHLVTVAGKH-LLLDCGLIQGGKADE----LRNHEPFVFDPQTIVAVVLSH 61
           GA   VTGSCH + +   H LL+DCGL QG +               F  +T+ A+V++H
Sbjct: 10  GAKDGVTGSCHQLHMDASHSLLVDCGLFQGNETSSDGRAATGRLDIEFSLRTVQALVVTH 69

Query: 62  AHIDHSGRLPLLVKAGFDGPIYTHKATAELCAIMLKDAAMLQVRDTERTNKKRAKHDLAP 121
            HIDH GR+P L+ AG+ GPIY  + +A+L  I+L+DA  L     ++  ++  K     
Sbjct: 70  VHIDHVGRIPYLLAAGYKGPIYCSEPSAKLLPIVLEDAFKLGFSRDQKAVERYLKLVEQR 129

Query: 122 LEPL-----FTVEDAEQAISQFVSLEYGQVTRVIPHVDICLSDAGHILGSALVELWL--- 173
           L PL      T+ + E+ I++                 + L  AGHILGSA VE+ L   
Sbjct: 130 LRPLPYQRWSTLLETEELIAR-----------------VRLQRAGHILGSAYVEIDLTYP 172

Query: 174 GEGKSQKKIVFSGDLGRAGMPILQNPTLVDTADLVLMESTYGNRFHRSWTDTLAELKDIF 233
             G+SQ +IVFSGDLG A  P+L  P   + AD++++ESTYG+R H   T     L+ + 
Sbjct: 173 TSGESQ-RIVFSGDLGAAHAPLLMPPESPERADILVLESTYGDRLHEDRTSRRQRLEAVI 231

Query: 234 AKTVNESQGNILLPAFSVGRAQELLYLFH--LYAKE---WDLGRWKICLDSPMAIEATRV 288
              + + QG +L+PAFS+GR QELLY     +++K+    D         +   IE+   
Sbjct: 232 EHAL-QDQGTVLIPAFSIGRTQELLYELEEIIHSKQQVSTDQSSLPADERARGGIESAGA 290

Query: 289 YVNNYPLMDEDFKRFTRQHPGQH----------------PL------------------- 313
             ++ PL  E+  R  R     H                PL                   
Sbjct: 291 PHSHSPLSSEERARVERNSDNAHGQLETDWPRLPIILDSPLATRFTEAYRSLQPYWNQEA 350

Query: 314 ------------LSNVEFIQTTEESIA----LNEVHKGLIIIAGSGMCNGGRIRSHLEHN 357
                         N+  I +  + IA    L +  +  I+IAG+GMC+GGRI ++L+  
Sbjct: 351 RERVEGGRNPLAFDNLIMIDSHADHIAVVNHLTQTARPAIVIAGNGMCSGGRIVNYLKAM 410

Query: 358 LWRSECDVIICGFQALGTPGRALVD-GAK--ELTIHGNSVNVAAKLHTVGGLSAHADQAE 414
           L     DV+  G+QA GTPG+A+   G K   + + G   ++ A++ ++GG SAHADQ  
Sbjct: 411 LHDPRHDVLFVGYQAQGTPGQAIQQYGPKGGYVDLDGERFDIRARVTSIGGYSAHADQKG 470

Query: 415 LLRWYRHFEEQPPLV-LVHGEPEAQQGLVAVMNQDPKTKPKALAI 458
           L+ +     E P  + +VHGE  A+Q L+ V+ Q       AL +
Sbjct: 471 LVEFVTGMREWPTKIGVVHGEHGARQALIKVLQQRYYAAGNALVV 515