Pairwise Alignments

Query, 856 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 768 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

 Score =  295 bits (756), Expect = 5e-84
 Identities = 172/448 (38%), Positives = 267/448 (59%), Gaps = 12/448 (2%)

Query: 406 GTVVVL-RDITQEELLKHQLQKRANFDGITGLLNRQAFE----EQLPEFASQARSLAVCY 460
           GT++++  DIT+   L  QL  +A +D +T  LNR  FE    + L E  SQ R+ A+ Y
Sbjct: 315 GTLLIVGEDITETRQLADQLAYQARYDLLTHTLNRNQFELELAKALKETDSQLRTHAMLY 374

Query: 461 LDLEQFKLINDSCGHTAGDRMLAMVARAIQSCLGPQELLARIGGDEFGLVICD---RTAL 517
           LDL+Q K++ND+ GH AGD  +   A  ++  L  +  LAR+GGDEF +++ D   R A+
Sbjct: 375 LDLDQLKVLNDTAGHDAGDGAIQFCASMLEDVLPFKATLARMGGDEFSVLLRDCTERDAV 434

Query: 518 AVAQLLKQIIAQVSLQVLHDKNCNYKVGLSIGVAFGRAPYINAQELLKDADIACIAAKAK 577
            VAQ +   +++V+    H +   + +  SIG+        + Q +   AD AC AAK +
Sbjct: 435 LVAQSIIHALSEVAFVWEHIR---FNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEE 491

Query: 578 GTNQIHIYDDKDKELTYQRNAPKWAVRIAQAIEENELLLYYQPIRGLGASSKRQRMEVLL 637
           G N+ ++Y   D++L  ++   +    +  A+    + L+ Q I  L         EVL+
Sbjct: 492 GRNRFNLYRQDDEDLRRRQLEMESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLV 551

Query: 638 RIQEPCGRILAPAQFIAAAERFKLMPEIDKEVIRKAFLWLSLNSQLWQD-HCISINLSGN 696
           RI+   G  ++P  F+ A+ER+ L   +D++++ + F WL    Q+      +SINLSGN
Sbjct: 552 RIKNAAGEYVSPGIFVPASERYNLAHRLDRKIVEQTFNWLEARPQVLDKLGRVSINLSGN 611

Query: 697 SLGAEGMVEYIAKQQQIFDIPSQCVCFEITETTAIQNRHRGMEMLRQLRKLGFSFALDDF 756
           S+G    V ++ ++ +   IP   VCFEITET A++N ++ +++L QL+ LG   ALDDF
Sbjct: 612 SIGNPDFVAFLLERLRDSRIPCSKVCFEITETAAMRNLNQAIKVLSQLKSLGCVLALDDF 671

Query: 757 GSGFASYGYLRELPVDYVKIDGCFVKNLAVNAKDYAIVKSIQDVCRVMGIETVAEFVENQ 816
           GSG +S+GYL++LPVD VKIDG FV ++  N  D  +V+SI ++ + MG  TVAEFVENQ
Sbjct: 672 GSGLSSFGYLQKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQ 731

Query: 817 EIIDRLQTIGINYAQGYAIGRPQPLASY 844
           +I++ LQ IG++YAQGY   RPQP+A +
Sbjct: 732 QILEALQQIGVDYAQGYLFSRPQPIADW 759