Pairwise Alignments

Query, 856 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1491 a.a., sensory box protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  226 bits (577), Expect = 6e-63
 Identities = 166/588 (28%), Positives = 294/588 (50%), Gaps = 34/588 (5%)

Query: 261  LMQQLALVDPMASVYRPVTSEGNEELSVLANRVNSLLARIYQQKERGKITLESIAEAVIL 320
            L ++   V+ ++ +Y  +T        +L N V+ LLA+ +          E+ +E V++
Sbjct: 905  LNKETGEVEKISGIYSDITQH-----KLLQNEVD-LLAQAF----------ENTSEGVLI 948

Query: 321  TDIEAKVIYMNPKAETLLEVASSNAVGESLASLLKAGEQLNQAVFHCIRLGETMPQVAKI 380
             D + ++   N  A+++L    +   G    +LL         +   +  G +     ++
Sbjct: 949  LDADEQIKVANRAAQSILGAGMAELAGRKFIALLTEHGTNRSEIATLLANGMSWTGEREL 1008

Query: 381  KLLTTMPRIIERSISNVLNHEKEIVGTVVVLRDITQEELLKHQLQKRANFDGITGLLNRQ 440
            ++ +     +  ++S +L  + ++   VVV  DIT+ +  +  L++ AN+D +TGL NR 
Sbjct: 1009 RIGSGQVCPVWLNVSVMLGLQGKVQHYVVVFSDITERKRSEADLRRLANYDVLTGLPNRS 1068

Query: 441  AFEEQLPEFASQA----RSLAVCYLDLEQFKLINDSCGHTAGDRMLAMVARAIQSCLGPQ 496
             F  +L +   +A      LA+ +LDL++FK +NDS GH  GD +L   A  +QSC+ P+
Sbjct: 1069 LFAARLNQAIHKATQNEEKLALMFLDLDRFKHVNDSFGHGMGDALLVEAAARLQSCIDPE 1128

Query: 497  ELLARIGGDEFGLVICDRTALAVAQLLKQIIAQVSLQV-LHDKNCNYKVGLSIGVAFGRA 555
              L R GGDEF ++I       +  L   I+ Q+     L  +   + +  SIG++    
Sbjct: 1129 YTLCRFGGDEFVVLIHGAEVDTLNHLANTILGQIETPFKLFGRE--FYISTSIGISIWPD 1186

Query: 556  PYINAQELLKDADIACIAAKAKGTNQIHIYD-DKDKELTYQRNAPKWAVRIAQAIEENEL 614
                 + L+K+AD+A   AK +G      Y  +++ E  Y     +    + +A+E  E 
Sbjct: 1187 DARQPEALIKNADLAMYHAKEEGRGNFQYYSQERNAEALYHL---RLEADLRKALERQEF 1243

Query: 615  LLYYQPIRGLGASSKRQRMEVLLRIQEPCGRILAPAQFIAAAERFKLMPEIDKEVIRKAF 674
             L+YQP   +   ++   ME LLR Q P    +    FI  AE   L+ +IDK V+R+A 
Sbjct: 1244 CLHYQPQVDVNDDNQVIGMEALLRWQHPKDGYIRTDIFIKVAEACGLVIDIDKWVLRQAC 1303

Query: 675  L----WLSLNSQLWQDHCISINLSGNSLGAEGMVEYIAKQQQIFDIPSQCVCFEITETTA 730
            L    W   + +L +   IS+N+S         ++++ +  +   IP + +  EITE   
Sbjct: 1304 LDGARW---SRKLKRPFKISVNISAVHFRQPDFIDHLRRTLEETCIPVENLALEITEGVL 1360

Query: 731  IQNRHRGMEMLRQLRKLGFSFALDDFGSGFASYGYLRELPVDYVKIDGCFVKNLAVNAKD 790
            ++  H   + LR LR++G   A+DDFG+G++S  YLR   V+ +KID  F+ ++A N  D
Sbjct: 1361 MKELHIARDHLRLLREMGVQVAIDDFGTGYSSLAYLRHFDVNLLKIDRSFLIDIADNQAD 1420

Query: 791  YAIVKSIQDVCRVMGIETVAEFVENQEIIDRLQTIGINYAQGYAIGRP 838
             AIV SI ++ R + ++ VAE VE +E ++++ + G +  QGY   +P
Sbjct: 1421 QAIVSSIIELARNLKLKVVAEGVETREQLNQVLSRGCHVIQGYYFAKP 1468