Pairwise Alignments

Query, 856 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1104 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  218 bits (555), Expect = 2e-60
 Identities = 182/588 (30%), Positives = 296/588 (50%), Gaps = 33/588 (5%)

Query: 274 VYRPVTSEGNEELSVLANRVNSLLARIYQQKERGKITL-ESIAEAVILTDIEAKVIYMNP 332
           + + V  E  + L +LA   +    +  +++ R  +++ E+  + +++T+ E  +I +N 
Sbjct: 370 ILKSVEDEPGQPLQLLAEGRDITDRKEGEEQHRLALSVFENSHDGILITNPEGLIIEVNR 429

Query: 333 KAETLLEVASSNAVGESLASLLKAGE-------QLNQAVFHCIRLGETMPQVAKIKLLTT 385
               L   A   A+G+  A +L +G        QL Q V         M    K   +T 
Sbjct: 430 AFCELTGYAREEAIGQP-ARMLNSGHHDRTYFRQLFQVVSERGFWKGEMWNRTKSGAVTA 488

Query: 386 MPRIIERSISNVLNHEKEIVGTVVVLRDITQEELLKHQLQKRANFDGITGLLNRQAFEEQ 445
               +  ++S V +    I   V V  DITQ++  + +L++ A++D +TGL NR    ++
Sbjct: 489 ----VLMTVSAVHDDGGRISHFVGVFSDITQQKENQRRLERLAHYDALTGLPNRTLMSDR 544

Query: 446 LPEFASQARS----LAVCYLDLEQFKLINDSCGHTAGDRMLAMVARAIQSCLGPQELLAR 501
           L    +QA+     LAVCYLDL+ FK INDS GH AGDR+L  VA  ++  L   +  AR
Sbjct: 545 LHLAMAQAQRRNKLLAVCYLDLDGFKAINDSHGHQAGDRLLMDVAERLRRSLRGGDTAAR 604

Query: 502 IGGDEFGLVICDRTALA-VAQLLKQIIAQVSLQ-VLHDKNCNYKVGLSIGVAFGRAPYIN 559
           +GGDEF L++ D TAL+ + Q+L++++  ++    L  +  +  V  SIGV        +
Sbjct: 605 LGGDEFVLLLNDLTALSELEQILERLLLSLAAPFALQGQTAS--VSGSIGVTIYPTDDAD 662

Query: 560 AQELLKDADIACIAAKAKGTNQIHIYD-DKDKELTYQRNAPKWAVRIAQAIEENELLLYY 618
           A  L++ AD A  AAK  G N+  ++D ++D      R A    V    A+E+ +  LYY
Sbjct: 663 ADTLVRHADQAMYAAKQSGRNRYQLFDTEQDSRARSLREA---IVNARAALEQEQFRLYY 719

Query: 619 QPIRGLGASSKRQRMEVLLRIQEPCGRILAPAQFIAAAERFKLMPEIDKEVIRKAFLWLS 678
           QP   L  S      E L+R Q P   ILAPA F+   E   L+ +I   V+  A   L 
Sbjct: 720 QPKVNL-CSGLIVGFEALIRWQHPEQGILAPAAFLVDLEETDLIVDIGDWVMETALAQLE 778

Query: 679 LNSQLWQDHCISINLSGNSLGAEGMVEYIAKQQQIFD----IPSQCVCFEITETTAIQNR 734
               L  D+ +SIN++   L      +++ + Q+  +    +P + +  EI ET A+++ 
Sbjct: 779 AWQALGWDYPVSINIAARHLQQP---DFLPRLQRALERHPAVPPRLLELEILETAALEDV 835

Query: 735 HRGMEMLRQLRKLGFSFALDDFGSGFASYGYLRELPVDYVKIDGCFVKNLAVNAKDYAIV 794
            +   ++   ++LG  FALDDFG+G++S  Y + LP   +KID  FV+++  + +  AIV
Sbjct: 836 GQVSLVIAACQRLGVGFALDDFGTGYSSLSYFKSLPARTLKIDQSFVRDMLHDPEALAIV 895

Query: 795 KSIQDVCRVMGIETVAEFVENQEIIDRLQTIGINYAQGYAIGRPQPLA 842
           + +  +        VAE +E  E    L  +G  +AQGYAI RP P A
Sbjct: 896 EGVVGLTSAFQRSVVAEGMETVEHGVMLLRLGCIHAQGYAIARPMPAA 943