Pairwise Alignments

Query, 856 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 874 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  233 bits (594), Expect = 4e-65
 Identities = 174/601 (28%), Positives = 305/601 (50%), Gaps = 38/601 (6%)

Query: 274 VYRPVTSEGNEELSVLANRVNSLLARIYQQKERGKITLESIAEAV-------ILTDIEAK 326
           V  PV  +G + L  +A      +     +++R ++ L  ++ AV       ++TD    
Sbjct: 291 VAAPVLDQGGQLLGGIA------IVEDATERKRAELQLRQLSRAVEQSPATIVITDTNGV 344

Query: 327 VIYMNPKAETLLEVASSNAVGESLASLLKAGE---QLNQAVFHCIRLGETMPQVAKIKLL 383
           + Y+NPK       ++  AVG    S+LK+GE   ++ Q ++  I  G     V   +  
Sbjct: 345 IEYVNPKFTRTTGYSAEEAVGLK-PSVLKSGETPLEVYQELWSTIASGGQWEGVFHNRRR 403

Query: 384 TTMPRIIERSISNVLNHEKEIVGTVVVLRDITQEELLKHQLQKRANFDGITGLLNRQAFE 443
                    +IS + +  + I   V V  DIT++   + ++ + A FD +TGL NR    
Sbjct: 404 NGELYWEHATISPITDDNQRITHFVAVKEDITEKRRQEDRIHQLAYFDELTGLPNRTLLH 463

Query: 444 EQLPEFASQAR----SLAVCYLDLEQFKLINDSCGHTAGDRMLAMVARAIQSCLGPQELL 499
           +++ +  + A     +LA+ ++DL+ FK +NDS GH  GDR+L  VA+ ++ C+   + +
Sbjct: 464 DRVSQCLAAAEREQETLALLFIDLDNFKTVNDSLGHFTGDRLLQSVAQRLKGCVRDSDTV 523

Query: 500 ARIGGDEFGLVICDRTALAVAQLLKQIIAQVSLQVLHDKNCNYKVGLSIGVAFGRAPYIN 559
           +R+GGDEF +V+ D      +Q+ ++II +V    + D +    V  SIG++       +
Sbjct: 524 SRLGGDEFVVVLADAQLDGASQVARKIIDRVGQPFVIDGH-QLTVTPSIGISLFPHDARD 582

Query: 560 AQELLKDADIACIAAKAKGTNQIHIYDDKDKELTYQRNAPKWAVRIAQAIEENELLLYYQ 619
            Q LLK+AD A   AK  G N    +  +   L ++R   + A+R  QA+E  E +L+YQ
Sbjct: 583 FQSLLKNADTAMYQAKESGRNAYQFFTAEMNVLAFERLVLENALR--QAVERQEFVLHYQ 640

Query: 620 PIRGLGASSKRQRMEVLLRIQEPCGRILAPAQFIAAAERFKLMPEIDKEVIRKAFLWLSL 679
           P   +G S +    E L+R   P   ++ PA+FI  AE   L+  I   V+ +A      
Sbjct: 641 PQVDMG-SGRVIGAEALVRWLHPELGMVPPARFIPVAEDSGLIGAIGDWVLYEA----CR 695

Query: 680 NSQLWQDHC-----ISINLSGNSLGAEGMVEYIAKQQQIFDIPSQCVCFEITETTAIQNR 734
            ++ WQ+       +++NLS   L    + E +A+  +   + S+ +  E+TE T +++ 
Sbjct: 696 QNRAWQEAGLPAIPVAVNLSAVQLRQSELHESVAELLRRTGLESRYLELELTERTVMEDA 755

Query: 735 HRGMEMLRQLRKLGFSFALDDFGSGFASYGYLRELPVDYVKIDGCFVKNLAVNAKDYAIV 794
              +  LR+L ++G   ++DDFG+G++S  YL+  P+D +KID  FV+++  +A D AI 
Sbjct: 756 EATVRCLRRLDEMGVMLSIDDFGTGYSSLSYLKRFPIDKLKIDQSFVRDIVADADDQAIA 815

Query: 795 KSIQDVCRVMGIETVAEFVENQEIIDRLQTIGINYAQGYAIGRPQPLASYCEQFETRLAQ 854
            +I  +   + +  +AE VE  E ++ L   G + AQG+  GRP P     ++F   LA+
Sbjct: 816 VAIISMGHSLRLRVIAEGVETAEQLEILHRHGCDEAQGFHFGRPMP----ADEFAAYLAR 871

Query: 855 R 855
           R
Sbjct: 872 R 872