Pairwise Alignments

Query, 161 a.a., regulator of sigma D (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 154 a.a., anti-RNA polymerase sigma 70 factor (RefSeq) from Shewanella amazonensis SB2B

 Score =  223 bits (567), Expect = 1e-63
 Identities = 107/155 (69%), Positives = 127/155 (81%), Gaps = 1/155 (0%)

Query: 1   MLRELEKAEQKWGGSNKLIDQWLENRRKLLVHYCQIAGLPPYTNAEKSLPSFEHVKSFCD 60
           ML +LEKAEQ+WGG+NKLIDQWLENRR LLVHYCQIAGLPPY +  + LPSF+HVK+FCD
Sbjct: 1   MLSQLEKAEQRWGGANKLIDQWLENRRNLLVHYCQIAGLPPYEDRAR-LPSFDHVKAFCD 59

Query: 61  LLVDYVSEGHFEVYDQVINACEKFGAPCKAAIQQVLPKITPTTNAALDFNDKYAETQDDQ 120
           LLVDYVSEGHFE+Y++V++ACE  G   +   + +LPKI  TT+ ALDFNDKY    DD 
Sbjct: 60  LLVDYVSEGHFEIYNKVVSACETNGKSSQDIAKNLLPKIHNTTDMALDFNDKYTGVDDDN 119

Query: 121 VLYQLDKDLSELAHTMETRFELEDKLLEVLHSKYS 155
           VL QLD+DLS L   METRF+LED+LLEVLHSK+S
Sbjct: 120 VLMQLDEDLSHLGDAMETRFQLEDQLLEVLHSKHS 154